Browse Element(s) Details


OsAffx.5777.1.S1_at

Description tigr:9636.m01002
TID=OsAffx.5777.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Transferase family
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1042011/11Transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g10390OsAffx.8965.1.S1_at1/118+6092034..6094474hypothetical protein
LOC_Os08g10400Os.8987.1.S1_at4/118+6096652..6099054expressed protein
LOC_Os08g10400Os.10468.1.S1_at2/118+6096652..6099054expressed protein
LOC_Os08g10410Os.6198.1.S1_at11/118+6106033..6109271expressed protein
LOC_Os08g10420OsAffx.5777.1.S1_at11/118+6115476..6117299Transferase family protein, expressed
LOC_Os08g10430Os.49897.1.S1_at11/118+6121076..6125048NB-ARC domain containing protein, expressed
LOC_Os08g10440OsAffx.29134.1.S1_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10440Os.23329.1.S1_s_at11/118+6131714..6135162NB-ARC domain containing protein, expressed
LOC_Os08g10450Os.5801.1.S1_at11/118+6135784..6138033equilibratiave nucleoside transporter 1, putative, expressed
LOC_Os08g10460NANA8+6139415..6144842retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016740molecular_functiontransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5777.1.S1_at--707--3951Chr08:6116005..6116029 (25 bp)
CGGACGCCCGGTCGAAGCTCAGCTT
LOC_Os08g10420
OsAffx.5777.1.S1_at--131--9671Chr08:6115987..6116011 (25 bp)
TCAGCTTCCCGGTGAACATCCGTCG
LOC_Os08g10420
OsAffx.5777.1.S1_at--1075--2591Chr08:6115925..6115949 (25 bp)
AACGCGATCGTCACCGCGTTCGTGG
LOC_Os08g10420
OsAffx.5777.1.S1_at--1030--1591Chr08:6115681..6115705 (25 bp)
AGCTGCGGGTCATCAGCTGGCTGCA
LOC_Os08g10420
OsAffx.5777.1.S1_at--1121--1751Chr08:6115657..6115681 (25 bp)
ACCTGCCGCTATACGACATGGATTT
LOC_Os08g10420
OsAffx.5777.1.S1_at--473--7571Chr08:6115626..6115650 (25 bp)
GGGTTTCCCGCGGATGATGTCCCGT
LOC_Os08g10420
OsAffx.5777.1.S1_at--864--6251Chr08:6115611..6115635 (25 bp)
GATGTCCCGTGCAGAGTCGGTACGA
LOC_Os08g10420
OsAffx.5777.1.S1_at--661--9931Chr08:6115591..6115615 (25 bp)
TACGAGGCGGGTTCGTTCACGTGAT
LOC_Os08g10420
OsAffx.5777.1.S1_at--773--9391Chr08:6115579..6115603 (25 bp)
TCGTTCACGTGATGAGTGGCAGGCC
LOC_Os08g10420
OsAffx.5777.1.S1_at--960--4631Chr08:6115540..6115564 (25 bp)
GCGTTCGCGTGCTAGCATGTTTGGA
LOC_Os08g10420
OsAffx.5777.1.S1_at--40--3511Chr08:6115506..6115530 (25 bp)
CATGGACGAGTTTGAGCGATTGCTT
LOC_Os08g10420
Target Sequence 
CGGACGCCCGGTCGAAGCTCAGCTTCCCGGTGAACATCCGTCGCCGCGTGCGACCCACCCTCCCGGACCGCTACTTCGGC
AACGCGATCGTCACCGCGTTCGTGGCGACCGCGGTGAGGAACATCGTCGCGTCGGGGTCATCATCGGCGACGGAGACCAC
GACGGCGTCGTTGGCCAAGGTCGCCGCGCGGATAAGCGGCGTGATGCGCCGCCTGGCCGCCGACAACAAGGAGCTGCTGC
GGTCGGCCGTCGACTACCACGAGATGGCGGCGACGGCGACGTCGCGCTGGCGGCGCCCGGACAGGGGCAGCCTGCCGGAG
ACGGAGCTGCGGGTCATCAGCTGGCTGCACCTGCCGCTATACGACATGGATTTTGGATGGGGTTTCCCGCGGATGATGTC
CCGTGCAGAGTCGGTACGAGGCGGGTTCGTTCACGTGATGAGTGGCAGGCCAGCCGACGGTGGTGGCGTTCGCGTGCTAG
CATGTTTGGAGGCTGAAAACATGGACGAGTTTGAGCGATTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5777.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis