Browse Element(s) Details


Os.53880.1.S1_at

Description gb:AK100580.1
DB_XREF= gi:32985789
TID=Os.53880.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53880 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023105M12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023105M12, full insert sequence.
FL= gb:AK100580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2688011/11bZIP transcription factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26880Os.53880.1.S1_at11/118+16239848..16241437bZIP transcription factor family protein, expressed
LOC_Os08g26890OsAffx.29362.2.S1_s_at11/118+16255970..16257123hypothetical protein
LOC_Os08g26890OsAffx.29362.1.S1_x_at10/118+16255970..16257123hypothetical protein
LOC_Os08g26890OsAffx.29362.1.S1_at10/118+16255970..16257123hypothetical protein
LOC_Os08g26890OsAffx.29362.2.S1_x_at4/118+16255970..16257123hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53880.1.S1_at--55--5071Chr08:16240896..16240920 (25 bp)
GCAGCTCACCACAACATTGAACATG
LOC_Os08g26880
Os.53880.1.S1_at--899--8971Chr08:16240913..16240937 (25 bp)
TGAACATGGTCACCCAAAGCTGTGC
LOC_Os08g26880
Os.53880.1.S1_at--608--2351Chr08:16240928..16240952 (25 bp)
AAAGCTGTGCCTTCGCAGAGTCTCA
LOC_Os08g26880
Os.53880.1.S1_at--268--1131Chr08:16240959..16240983 (25 bp)
AGTGCTGCGCACTCAGATGATGGAG
LOC_Os08g26880
Os.53880.1.S1_at--78--931Chr08:16240993..16241017 (25 bp)
AGGCTATCAGCGCTCCGTGAGATAA
LOC_Os08g26880
Os.53880.1.S1_at--776--8151Chr08:16241035..16241059 (25 bp)
GGAAACCAATCACCTTCTAATCCTA
LOC_Os08g26880
Os.53880.1.S1_at--362--5151Chr08:16241104..16241128 (25 bp)
GCAACTACTGGCCATTACGATTATT
LOC_Os08g26880
Os.53880.1.S1_at--1152--6431Chr08:16241188..16241212 (25 bp)
GATCAGTTTCTGTACCAGTGCTAGC
LOC_Os08g26880
Os.53880.1.S1_at--1036--1551Chr08:16241210..16241234 (25 bp)
AGCTAGCTTCTAGCCAGGAAGTCGA
LOC_Os08g26880
Os.53880.1.S1_at--273--7111Chr08:16241322..16241346 (25 bp)
GTCACCAGTGGTTGTTTATCTTTTG
LOC_Os08g26880
Os.53880.1.S1_at--644--2971Chr08:16241382..16241406 (25 bp)
AATGGTGTTGTACCTTTCTGCTGTT
LOC_Os08g26880
Target Sequence 
GCAGCTCACCACAACATTGAACATGGTCACCCAAAGCTGTGCCTTCGCAGAGTCTCAGAACTCAGTGCTGCGCACTCAGA
TGATGGAGCTGGATAGCAGGCTATCAGCGCTCCGTGAGATAATCTTCTACATGAACAATGGAAACCAATCACCTTCTAAT
CCTACAATAGCAGCGACTACATACCCATCCACCACTACAATGACTGCAGCAACTACTGGCCATTACGATTATTATGATGT
TTTCACTGCAAATGCATGGGGCTCAGGGATGCAAATGATGCAGCAGCCCATAGATCAGTTTCTGTACCAGTGCTAGCTAG
CTTCTAGCCAGGAAGTCGATAGAGATAGTGGACCAAATTAAGAAACAGGGCATTGAGATATTGGGCGTGGTGAATGTTGT
AGCTAGGTCCATATTAATTATATTGTGTCACCAGTGGTTGTTTATCTTTTGCTTTGATTTGTGATCGGTTGTGGGGGCAG
GAAAAAAATGGTGTTGTACCTTTCTGCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53880.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis