Browse Element(s) Details


OsAffx.20877.1.S1_x_at

Description gb:XM_354391.1
DB_XREF= gi:35190976
GEN=OSJNBa0077F02.27
TID=OsAffx.20877.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g146101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g269001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14570Os.20234.2.S1_at11/1111+8192643..8196287expressed protein
LOC_Os11g14570Os.20234.1.S1_x_at11/1111+8192643..8196287expressed protein
LOC_Os11g14570Os.20234.1.S1_at11/1111+8192643..8196287expressed protein
LOC_Os11g14570OsAffx.30976.1.S1_at1/1111+8192643..8196287expressed protein
LOC_Os11g14580OsAffx.447.1.S1_at5/1111+8199535..8203584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14580OsAffx.22947.2.S1_x_at2/1111+8199535..8203584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14580OsAffx.22947.3.S1_x_at1/1111+8199535..8203584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14580Os.52609.1.S1_at1/1111+8199535..8203584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14590Os.41695.15.S1_s_at11/1111+8209633..8215759hypothetical protein
LOC_Os11g14590Os.41695.3.S1_x_at5/1111+8209633..8215759hypothetical protein
LOC_Os11g14590Os.41695.5.S1_x_at5/1111+8209633..8215759hypothetical protein
LOC_Os11g14590Os.41695.4.S1_x_at5/1111+8209633..8215759hypothetical protein
LOC_Os11g14590Os.41695.2.S1_x_at4/1111+8209633..8215759hypothetical protein
LOC_Os11g14590OsAffx.1755.1.S1_x_at3/1111+8209633..8215759hypothetical protein
LOC_Os11g14590OsAffx.1755.1.S1_at2/1111+8209633..8215759hypothetical protein
LOC_Os11g14600NANA11+8218251..8219135transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14610OsAffx.20877.1.S1_x_at1/1111+8220304..8228768retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14610OsAffx.20877.1.S1_at1/1111+8220304..8228768retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14610Os.45173.1.S1_x_at1/1111+8220304..8228768retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14620Os.46500.2.S1_at2/1111+8231996..8232920hypothetical protein
LOC_Os11g14630OsAffx.7108.1.S1_at11/1111+8238108..8242668hypothetical protein
LOC_Os11g14640NANA11+8246820..8248165retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14650Os.38764.1.S1_x_at5/1111+8248455..8257304retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20877.1.S1_x_at--343--7457Chr12:17443594..17443701 (25 bp)
GTGTCAACCACAAGCCAGCTCGCTG
NONE
OsAffx.20877.1.S1_x_at--646--7651Chr07:13105113..13105137 (25 bp)
GGGAGTCCATACCTCTGGCTCTTGA
NONE
OsAffx.20877.1.S1_x_at--239--8031Chr07:13105114..13105138 (25 bp)
GGAGTCCATACCTCTGGCTCTTGAG
NONE
OsAffx.20877.1.S1_x_at--146--6111Chr07:13105115..13105139 (25 bp)
GAGTCCATACCTCTGGCTCTTGAGG
NONE
OsAffx.20877.1.S1_x_at--1140--1131Chr07:13105116..13105140 (25 bp)
AGTCCATACCTCTGGCTCTTGAGGG
NONE
OsAffx.20877.1.S1_x_at--850--151Chr07:13105145..13105415 (25 bp)
ATTATGATCCAGGAACGTTTAACTT
NONE
OsAffx.20877.1.S1_x_at--723--10391Chr07:13105146..13105416 (25 bp)
TTATGATCCAGGAACGTTTAACTTC
NONE
OsAffx.20877.1.S1_x_at--522--10091Chr07:13105147..13105417 (25 bp)
TATGATCCAGGAACGTTTAACTTCT
NONE
OsAffx.20877.1.S1_x_at--791--691Chr07:13105148..13105418 (25 bp)
ATGATCCAGGAACGTTTAACTTCTG
NONE
OsAffx.20877.1.S1_x_at--206--8851Chr07:13105149..13105419 (25 bp)
TGATCCAGGAACGTTTAACTTCTGG
NONE
OsAffx.20877.1.S1_x_at--699--5831Chr07:13105150..13105420 (25 bp)
GATCCAGGAACGTTTAACTTCTGGT
NONE
Target Sequence 
GTGTCAACCACAAGCCAGCTCGCTGGGGAGTCCATACCTCTGGCTCTTGAGGGGGTGATTATGATCCAGGAACGTTTAAC
TTCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20877.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis