Browse Element(s) Details


Os.20234.1.S1_at

Description gb:AK072808.1
DB_XREF= gi:32982831
TID=Os.20234.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20234 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140C10, full insert sequence.
FL= gb:AK072808.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1457011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14560OsAffx.29130.2.A1_at2/1111+8171875..8182880transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14560OsAffx.4856.1.S1_x_at1/1111+8171875..8182880transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14570Os.20234.2.S1_at11/1111+8192643..8196287expressed protein
LOC_Os11g14570Os.20234.1.S1_x_at11/1111+8192643..8196287expressed protein
LOC_Os11g14570Os.20234.1.S1_at11/1111+8192643..8196287expressed protein
LOC_Os11g14570OsAffx.30976.1.S1_at1/1111+8192643..8196287expressed protein
LOC_Os11g14580OsAffx.447.1.S1_at5/1111+8199535..8203584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14580OsAffx.22947.2.S1_x_at2/1111+8199535..8203584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14580OsAffx.22947.3.S1_x_at1/1111+8199535..8203584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14580Os.52609.1.S1_at1/1111+8199535..8203584retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14590Os.41695.15.S1_s_at11/1111+8209633..8215759hypothetical protein
LOC_Os11g14590Os.41695.3.S1_x_at5/1111+8209633..8215759hypothetical protein
LOC_Os11g14590Os.41695.5.S1_x_at5/1111+8209633..8215759hypothetical protein
LOC_Os11g14590Os.41695.4.S1_x_at5/1111+8209633..8215759hypothetical protein
LOC_Os11g14590Os.41695.2.S1_x_at4/1111+8209633..8215759hypothetical protein
LOC_Os11g14590OsAffx.1755.1.S1_x_at3/1111+8209633..8215759hypothetical protein
LOC_Os11g14590OsAffx.1755.1.S1_at2/1111+8209633..8215759hypothetical protein
LOC_Os11g14600NANA11+8218251..8219135transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14610OsAffx.20877.1.S1_x_at1/1111+8220304..8228768retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14610OsAffx.20877.1.S1_at1/1111+8220304..8228768retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14610Os.45173.1.S1_x_at1/1111+8220304..8228768retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20234.1.S1_at--237--2051Chr11:8194173..8194197 (25 bp)
ACTTTAAACTGGGTATGTTGCAACT
LOC_Os11g14570
Os.20234.1.S1_at--764--2371Chr11:8194168..8194192 (25 bp)
AAACTGGGTATGTTGCAACTAGCTA
LOC_Os11g14570
Os.20234.1.S1_at--1048--6651Chr11:8194157..8194181 (25 bp)
GTTGCAACTAGCTACCTTCATAACG
LOC_Os11g14570
Os.20234.1.S1_at--956--5131Chr11:8194154..8194178 (25 bp)
GCAACTAGCTACCTTCATAACGCTT
LOC_Os11g14570
Os.20234.1.S1_at--529--10011Chr11:8194149..8194173 (25 bp)
TAGCTACCTTCATAACGCTTCGTGT
LOC_Os11g14570
Os.20234.1.S1_at--930--4851Chr11:8194147..8194171 (25 bp)
GCTACCTTCATAACGCTTCGTGTAT
LOC_Os11g14570
Os.20234.1.S1_at--504--9811Chr11:8194137..8194161 (25 bp)
TAACGCTTCGTGTATACACCTACGT
LOC_Os11g14570
Os.20234.1.S1_at--953--4891Chr11:8194133..8194157 (25 bp)
GCTTCGTGTATACACCTACGTATAG
LOC_Os11g14570
Os.20234.1.S1_at--774--9851Chr11:8194123..8194147 (25 bp)
TACACCTACGTATAGACCTTTTGAA
LOC_Os11g14570
Os.20234.1.S1_at--1048--4271Chr11:8194119..8194143 (25 bp)
CCTACGTATAGACCTTTTGAAGAAG
LOC_Os11g14570
Os.20234.1.S1_at--261--2851Chr11:8194085..8194109 (25 bp)
AAGTGAATGCAGCTAATTCAGGATA
LOC_Os11g14570
Target Sequence 
ACTTTAAACTGGGTATGTTGCAACTAGCTACCTTCATAACGCTTCGTGTATACACCTACGTATAGACCTTTTGAAGAAGA
AATACATAAAGTGAATGCAGCTAATTCAGGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20234.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis