Browse Element(s) Details


OsAffx.30976.1.S1_at

Description tigr:9639.m01337
TID=OsAffx.30976.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1452011/11hypothetical protein
LOC_Os11g145701/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14470NANA11+8125514..8126172hAT family dimerisation domain containing protein
LOC_Os11g14480NANA11+8127130..8127888Ank repeat PF|00023 containing protein, putative
LOC_Os11g14490OsAffx.18849.1.S1_at11/1111+8135179..8135930hypothetical protein
LOC_Os11g14490OsAffx.26840.1.S1_at3/1111+8135179..8135930hypothetical protein
LOC_Os11g14490OsAffx.26840.1.S1_s_at1/1111+8135179..8135930hypothetical protein
LOC_Os11g14500NANA11+8138732..8139568hypothetical protein
LOC_Os11g14510Os.14919.1.S1_at6/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.2.S1_s_at5/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.29313.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.2.S1_x_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510Os.56216.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14520OsAffx.30976.1.S1_at11/1111+8150211..8153716hypothetical protein
LOC_Os11g14530OsAffx.18850.1.S1_at11/1111+8156446..8157113hypothetical protein
LOC_Os11g14544Os.11271.1.S1_a_at11/1111+8158813..8165571expressed protein
LOC_Os11g14544Os.11271.2.S1_at11/1111+8158813..8165571expressed protein
LOC_Os11g14560OsAffx.29130.2.A1_at2/1111+8171875..8182880transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14560OsAffx.4856.1.S1_x_at1/1111+8171875..8182880transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30976.1.S1_at--416--10251Chr11:8150631..8150655 (25 bp)
TTTGGTGGCAATCCTCATCGCAACA
LOC_Os11g14520
OsAffx.30976.1.S1_at--745--4711Chr11:8150532..8150556 (25 bp)
GCTGGCATTTCAGGCATTCTTGATC
LOC_Os11g14520
OsAffx.30976.1.S1_at--651--112Chr11:8150517..8150541 (25 bp)
ATTCTTGATCTCTGACACCTTAGCT
LOC_Os11g14520
OsAffx.30976.1.S1_at--1018--9411Chr11:8150467..8150491 (25 bp)
TCGTGTGCATCCTGTCTAGGTCAGA
LOC_Os11g14520
OsAffx.30976.1.S1_at--684--8091Chr11:8150442..8150466 (25 bp)
GGACCTTGAGTTCTTGCTCTACTAT
LOC_Os11g14520
OsAffx.30976.1.S1_at--1117--2631Chr11:8150376..8150400 (25 bp)
AACCACAACAGCATTTGCCACTGGG
LOC_Os11g14520
OsAffx.30976.1.S1_at--347--4411Chr11:8150360..8150384 (25 bp)
GCCACTGGGTTATACACTGTTCTTG
LOC_Os11g14520
OsAffx.30976.1.S1_at--599--9351Chr11:8150331..8150355 (25 bp)
TCGCATCCTGTGGTTGGCTATTGGA
LOC_Os11g14520
OsAffx.30976.1.S1_at--970--10211Chr11:8150287..8150311 (25 bp)
TATTGCCTGTTCTGACTAAGCTAAT
LOC_Os11g14520
OsAffx.30976.1.S1_at--560--5291Chr11:8150258..8150282 (25 bp)
GAATGGCCGGTCTTGAAGCTCAGAT
LOC_Os11g14520
OsAffx.30976.1.S1_at--412--4831Chr11:8150241..8150265 (25 bp)
GCTCAGATTTCGGTTGGGTCATGCT
LOC_Os11g14520
Target Sequence 
TTTGGTGGCAATCCTCATCGCAACAATCACCTTCGCTGCTGCTTTCACCTTACCTGGAGGATATAGCAGCGATGATGGGC
ATCCTATCATGGCTAGAAAGCTGGCATTTCAGGCATTCTTGATCTCTGACACCTTAGCTATGTGCTCCTCACTTGCTGTT
GCCTTCGTGTGCATCCTGTCTAGGTCAGAGGACCTTGAGTTCTTGCTCTACTATAGAACCATTACTAGAAACCTCATGTG
GTTGGCATACATGGCAACCACAACAGCATTTGCCACTGGGTTATACACTGTTCTTGCCCCTCGCATCCTGTGGTTGGCTA
TTGGAATTTGTTTTCTATCAATCTTATTGCCTGTTCTGACTAAGCTAATTGGTGAATGGCCGGTCTTGAAGCTCAGATTT
CGGTTGGGTCATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30976.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis