Browse Element(s) Details


OsAffx.18850.1.S1_at

Description tigr:9639.m01338
TID=OsAffx.18850.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1453011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14490OsAffx.18849.1.S1_at11/1111+8135179..8135930hypothetical protein
LOC_Os11g14490OsAffx.26840.1.S1_at3/1111+8135179..8135930hypothetical protein
LOC_Os11g14490OsAffx.26840.1.S1_s_at1/1111+8135179..8135930hypothetical protein
LOC_Os11g14500NANA11+8138732..8139568hypothetical protein
LOC_Os11g14510Os.14919.1.S1_at6/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.2.S1_s_at5/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.29313.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.2.S1_x_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510Os.56216.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14520OsAffx.30976.1.S1_at11/1111+8150211..8153716hypothetical protein
LOC_Os11g14530OsAffx.18850.1.S1_at11/1111+8156446..8157113hypothetical protein
LOC_Os11g14544Os.11271.1.S1_a_at11/1111+8158813..8165571expressed protein
LOC_Os11g14544Os.11271.2.S1_at11/1111+8158813..8165571expressed protein
LOC_Os11g14560OsAffx.29130.2.A1_at2/1111+8171875..8182880transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14560OsAffx.4856.1.S1_x_at1/1111+8171875..8182880transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18850.1.S1_at--668--6131Chr11:8156505..8156529 (25 bp)
GAGGGATCAGCAGCGTGAGGAGCAA
LOC_Os11g14530
OsAffx.18850.1.S1_at--1077--2771Chr11:8156528..8156552 (25 bp)
AAGAGCACCACTGCCGCGGAGGCTA
LOC_Os11g14530
OsAffx.18850.1.S1_at--850--5631Chr11:8156565..8156589 (25 bp)
GACACCGGCGGAATTAGTAGTCGTG
LOC_Os11g14530
OsAffx.18850.1.S1_at--96--3371Chr11:8156567..8156591 (25 bp)
CACCGGCGGAATTAGTAGTCGTGGT
LOC_Os11g14530
OsAffx.18850.1.S1_at--197--151Chr11:8156577..8156601 (25 bp)
ATTAGTAGTCGTGGTGGTGGCCGAG
LOC_Os11g14530
OsAffx.18850.1.S1_at--752--4251Chr11:8156603..8156627 (25 bp)
CCGTGGCCGAGGGAGCGCAACATTC
LOC_Os11g14530
OsAffx.18850.1.S1_at--741--1071Chr11:8156612..8156636 (25 bp)
AGGGAGCGCAACATTCCGGCACCGT
LOC_Os11g14530
OsAffx.18850.1.S1_at--1113--5871Chr11:8156615..8156639 (25 bp)
GAGCGCAACATTCCGGCACCGTTGA
LOC_Os11g14530
OsAffx.18850.1.S1_at--138--4271Chr11:8156627..8156651 (25 bp)
CCGGCACCGTTGAAGATTTGGTCAC
LOC_Os11g14530
OsAffx.18850.1.S1_at--920--3351Chr11:8156631..8156655 (25 bp)
CACCGTTGAAGATTTGGTCACCGGG
LOC_Os11g14530
OsAffx.18850.1.S1_at--594--10711Chr11:8156636..8156660 (25 bp)
TTGAAGATTTGGTCACCGGGATGGA
LOC_Os11g14530
Target Sequence 
GAGGGATCAGCAGCGTGAGGAGCAAGAGCACCACTGCCGCGGAGGCTACGGGGAGGAACCGACACCGGCGGAATTAGTAG
TCGTGGTGGTGGCCGAGGCCGTGGCCGAGGGAGCGCAACATTCCGGCACCGTTGAAGATTTGGTCACCGGGATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis