Browse Element(s) Details


Os.11271.2.S1_at

Description gb:CB666821
DB_XREF= gi:29670546
DB_XREF=OSJNEd13O01.r
CLONE=OSJNEd13O01
TID=Os.11271.2
CNT=131
FEA=FLmRNA
TIER=Stack
STK=6
UG=Os.11271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-C07, full insert sequence
FL= gb:AK070413.1 gb:AK104835.1 gb:AK099053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1454411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14490OsAffx.18849.1.S1_at11/1111+8135179..8135930hypothetical protein
LOC_Os11g14490OsAffx.26840.1.S1_at3/1111+8135179..8135930hypothetical protein
LOC_Os11g14490OsAffx.26840.1.S1_s_at1/1111+8135179..8135930hypothetical protein
LOC_Os11g14500NANA11+8138732..8139568hypothetical protein
LOC_Os11g14510Os.14919.1.S1_at6/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.2.S1_s_at5/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.29313.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.2.S1_x_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510Os.56216.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14520OsAffx.30976.1.S1_at11/1111+8150211..8153716hypothetical protein
LOC_Os11g14530OsAffx.18850.1.S1_at11/1111+8156446..8157113hypothetical protein
LOC_Os11g14544Os.11271.1.S1_a_at11/1111+8158813..8165571expressed protein
LOC_Os11g14544Os.11271.2.S1_at11/1111+8158813..8165571expressed protein
LOC_Os11g14560OsAffx.29130.2.A1_at2/1111+8171875..8182880transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14560OsAffx.4856.1.S1_x_at1/1111+8171875..8182880transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11271.2.S1_at--226--2891Chr11:8159498..8159522 (25 bp)
AAGGTCGCTGACTCAAACATACACA
LOC_Os11g14544
Os.11271.2.S1_at--1089--9971Chr11:8159324..8159348 (25 bp)
TACCTTAGCAATGTGCGCCTCACTT
LOC_Os11g14544
Os.11271.2.S1_at--111--3751Chr11:8159306..8159330 (25 bp)
CTCACTTGCTGTTGCGTTCATATGC
LOC_Os11g14544
Os.11271.2.S1_at--227--811Chr11:8159270..8159294 (25 bp)
ATGGGAGGATCTCGATTTCTTGCTT
LOC_Os11g14544
Os.11271.2.S1_at--958--9851Chr11:8159192..8159216 (25 bp)
TACAGCATTTGCAACCGGTTTATAC
LOC_Os11g14544
Os.11271.2.S1_at--363--6811Chr11:8159175..8159199 (25 bp)
GTTTATACACAGTATTGGCCCCTCG
LOC_Os11g14544
Os.11271.2.S1_at--595--9091Chr11:8159125..8159149 (25 bp)
TGCTCTGTTGCTGTTTTAGTGCCAA
LOC_Os11g14544
Os.11271.2.S1_at--849--7271Chr11:8159107..8159131 (25 bp)
GTGCCAATTCTCACTAAGGTGCTCG
LOC_Os11g14544
Os.11271.2.S1_at--166--8211Chr11:8159081..8159105 (25 bp)
GGAATGGCCTGTCTTAAAGCTCAGA
LOC_Os11g14544
Os.11271.2.S1_at--168--2351Chr11:8159066..8159090 (25 bp)
AAAGCTCAGAATTCGGTTGGGCCAA
LOC_Os11g14544
Os.11271.2.S1_at--872--8651Chr11:8159049..8159073 (25 bp)
TGGGCCAAGCTTTCAAATCAGAGTT
LOC_Os11g14544
Target Sequence 
AAGGTCGCTGACTCAAACATACACAAGCAACACTTCGCTAGTGGCGATCCTCATCGCAACAATTACCTTTGCTGCTGCTT
TCACCCTGCCTGGAGGATACAGCAGTGATGCTGGAAGCCAGGGACTTCCTATAATGGCAAGGAACGTTGCCTTTAAGGCA
TTCTTGATATCAGATACCTTAGCAATGTGCGCCTCACTTGCTGTTGCGTTCATATGCATCATAGCAAGATGGGAGGATCT
CGATTTCTTGCTTTACTACAGATCCTTCACCAAGAAGCTTATGTGGTTCGCGTACATGGCAACAACTACAGCATTTGCAA
CCGGTTTATACACAGTATTGGCCCCTCGGCTGCTATGGTTAGCTGTTGGAATTTGCTCTGTTGCTGTTTTAGTGCCAATT
CTCACTAAGGTGCTCGGGGAATGGCCTGTCTTAAAGCTCAGAATTCGGTTGGGCCAAGCTTTCAAATCAGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11271.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis