Browse Element(s) Details


Os.11271.1.S1_a_at

Description gb:AK063436.1
DB_XREF= gi:32973454
TID=Os.11271.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-042-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-E06, full insert sequence.
FL= gb:AK063436.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1454411/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14490OsAffx.18849.1.S1_at11/1111+8135179..8135930hypothetical protein
LOC_Os11g14490OsAffx.26840.1.S1_at3/1111+8135179..8135930hypothetical protein
LOC_Os11g14490OsAffx.26840.1.S1_s_at1/1111+8135179..8135930hypothetical protein
LOC_Os11g14500NANA11+8138732..8139568hypothetical protein
LOC_Os11g14510Os.14919.1.S1_at6/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.2.S1_s_at5/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.29313.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510OsAffx.25168.2.S1_x_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14510Os.56216.1.S1_at1/1111+8141325..8149715transposon protein, putative, Mutator sub-class
LOC_Os11g14520OsAffx.30976.1.S1_at11/1111+8150211..8153716hypothetical protein
LOC_Os11g14530OsAffx.18850.1.S1_at11/1111+8156446..8157113hypothetical protein
LOC_Os11g14544Os.11271.1.S1_a_at11/1111+8158813..8165571expressed protein
LOC_Os11g14544Os.11271.2.S1_at11/1111+8158813..8165571expressed protein
LOC_Os11g14560OsAffx.29130.2.A1_at2/1111+8171875..8182880transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14560OsAffx.4856.1.S1_x_at1/1111+8171875..8182880transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11271.1.S1_a_at--714--1091Chr11:8161664..8161688 (25 bp)
AGTGGCCATGTTACTTTAGCTGCTT
LOC_Os11g14544
Os.11271.1.S1_a_at--307--4771Chr11:8161646..8161670 (25 bp)
GCTGCTTTTCTACTCAAATACTGCC
LOC_Os11g14544
Os.11271.1.S1_a_at--708--3291Chr11:8161632..8161656 (25 bp)
CAAATACTGCCATGAACAAGGATTC
LOC_Os11g14544
Os.11271.1.S1_a_at--98--211Chr11:8161553..8161577 (25 bp)
ATTTGCAACGGCCACAAGGACCTGG
LOC_Os11g14544
Os.11271.1.S1_a_at--152--971Chr11:8161537..8161561 (25 bp)
AGGACCTGGCACTGGAGTTGATAGC
LOC_Os11g14544
Os.11271.1.S1_a_at--731--8831Chr11:8161519..8161543 (25 bp)
TGATAGCGACTCAGCCTGCCTTGTC
LOC_Os11g14544
Os.11271.1.S1_a_at--619--6271Chr11:8161490..8161514 (25 bp)
GATGTCAACAAATACGGCGAGTCTC
LOC_Os11g14544
Os.11271.1.S1_a_at--62--6111Chr11:8161472..8161496 (25 bp)
GAGTCTCCCATGTACATTGCGTTGA
LOC_Os11g14544
Os.11271.1.S1_a_at--575--51Chr11:8161400..8161424 (25 bp)
ATTGATGGTTCTTCTCATTCAGGAA
LOC_Os11g14544
Os.11271.1.S1_a_at--730--5431Chr11:8161378..8161402 (25 bp)
GAACCTATGGCTACAATGCTCTCCA
LOC_Os11g14544
Os.11271.1.S1_a_at--954--3011Chr11:8161364..8161388 (25 bp)
AATGCTCTCCATGCAGCTATTAGAA
LOC_Os11g14544
Target Sequence 
AGTGGCCATGTTACTTTAGCTGCTTTTCTACTCAAATACTGCCATGAACAAGGATTCAGTGAGGTAATCTTGAAACAGGA
CAAGCACAAATGTAATGCACTGCACCATGCCATTTGCAACGGCCACAAGGACCTGGCACTGGAGTTGATAGCGACTCAGC
CTGCCTTGTCCAAAGATGTCAACAAATACGGCGAGTCTCCCATGTACATTGCGTTGATGATGAGGGATTCTAAGTTTACA
GATATTTTTGAGAAACTGTTGGGAATTGATGGTTCTTCTCATTCAGGAACCTATGGCTACAATGCTCTCCATGCAGCTAT
TAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11271.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis