Browse Element(s) Details


Os.7337.1.S1_at

Description gb:AK064077.1
DB_XREF= gi:32974095
TID=Os.7337.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A07, full insert sequence.
FL= gb:AK121419.1 gb:AK109892.1 gb:AK064077.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3265011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32610OsAffx.31986.1.S1_at11/1112+19646824..19647784expressed protein
LOC_Os12g32620Os.7784.1.S1_at11/1112+19651676..19653551Pollen-specific protein SF3, putative, expressed
LOC_Os12g32630OsAffx.7769.1.S1_at10/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32630Os.26764.1.A1_at9/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32640Os.54777.1.S1_at11/1112+19666321..19669899Haemolysin-III related family protein, expressed
LOC_Os12g32650Os.7337.1.S2_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S3_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S1_at11/1112+19672493..19679518expressed protein
LOC_Os12g32660Os.7337.3.S1_x_at11/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660Os.7337.2.S1_at10/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_x_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32670Os.53078.1.S1_at11/1112+19687898..19690723NB-ARC domain containing protein, expressed
LOC_Os12g32680OsAffx.7770.1.S1_at11/1112+19701881..19705582NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7337.1.S1_at--783--7291Chr12:19674681..19674705 (25 bp)
GTGCTGAGTGCTTCCTAAATGTCGA
LOC_Os12g32650
Os.7337.1.S1_at--224--4791Chr12:19675020..19675044 (25 bp)
GCTCCATTTCTACCATTGCTGTTTA
LOC_Os12g32650
Os.7337.1.S1_at--1059--871Chr12:19675056..19675080 (25 bp)
ATGGCCTTCAATATCGCATTGCTCA
LOC_Os12g32650
Os.7337.1.S1_at--636--6671Chr12:19675107..19675131 (25 bp)
GTTGCTTCGCTTACTGCTACTTCAG
LOC_Os12g32650
Os.7337.1.S1_at--961--9871Chr12:19675300..19675324 (25 bp)
TACATCCCTCATGGCGCAGAGTTAA
LOC_Os12g32650
Os.7337.1.S1_at--233--431Chr12:19675329..19675353 (25 bp)
ATCTTTCATCCTAGGCGGTGTGGTA
LOC_Os12g32650
Os.7337.1.S1_at--229--9011Chr12:19675432..19675456 (25 bp)
TGAATCAACCAAACACTGTCCGGCT
LOC_Os12g32650
Os.7337.1.S1_at--810--5631Chr12:19675462..19675486 (25 bp)
GACACGCTACGGGATTTTACTGATT
LOC_Os12g32650
Os.7337.1.S1_at--68--5111Chr12:19675592..19675616 (25 bp)
GCACGTGTACGTAGGATGGCCGTCA
LOC_Os12g32650
Os.7337.1.S1_at--1120--8411Chr12:19675609..19675633 (25 bp)
GGCCGTCAGGCCATATATAGTTATA
LOC_Os12g32650
Os.7337.1.S1_at--833--9271Chr12:19675640..19675664 (25 bp)
TCCTGTAGCCTGTGTGTTCTCAAAA
LOC_Os12g32650
Target Sequence 
GTGCTGAGTGCTTCCTAAATGTCGATGATAGTCTGATTGATTGTGGAGGAGCTCCATTTCTACCATTGCTGTTTATATTG
GTGAATATGGCCTTCAATATCGCATTGCTCAATTTGGTGAAGCTGTCATCTGCGCTGGTTGCTTCGCTTACTGCTACTTC
AGCAGTGCCAATATCAATCTACATACTTTCACTTCCGTTGCCCTACATCCCTCATGGCGCAGAGTTAAGTTCATCTTTCA
TCCTAGGCGGTGTGGTATTGCTGATGGGGCTGATTATATATAACCTTCCGCAATCATCGAAGAAACAATCCAAGATTGAG
TGAAGATAAAGTGACTGAATCAACCAAACACTGTCCGGCTCATCTGACACGCTACGGGATTTTACTGATTTATTTGAGTT
GCAACATAGTGAAATAGGGTTCCAAACTGAAGGGCATGACATAACACATTCAAATTTGTGAATACGTTGATTTATTTGAA
CTCAAAATTCAAGCAGCACGTGTACGTAGGATGGCCGTCAGGCCATATATAGTTATATTATACTCCTGTAGCCTGTGTGT
TCTCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis