Browse Element(s) Details


OsAffx.31986.1.S1_at

Description tigr:9640.m03169
TID=OsAffx.31986.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3261011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32560OsAffx.19936.1.S1_at11/1112+19624136..19625193hypothetical protein
LOC_Os12g32580OsAffx.31985.1.S1_at11/1112+19628407..19631950expressed protein
LOC_Os12g32580Os.33256.1.S1_at1/1112+19628407..19631950expressed protein
LOC_Os12g32590Os.52293.1.S1_at11/1112+19634919..19639227NB-ARC domain containing protein, expressed
LOC_Os12g32600OsAffx.19937.1.S1_at11/1112+19643336..19645788hypothetical protein
LOC_Os12g32610OsAffx.31986.1.S1_at11/1112+19646824..19647784expressed protein
LOC_Os12g32620Os.7784.1.S1_at11/1112+19651676..19653551Pollen-specific protein SF3, putative, expressed
LOC_Os12g32630OsAffx.7769.1.S1_at10/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32630Os.26764.1.A1_at9/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32640Os.54777.1.S1_at11/1112+19666321..19669899Haemolysin-III related family protein, expressed
LOC_Os12g32650Os.7337.1.S2_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S3_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S1_at11/1112+19672493..19679518expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31986.1.S1_at--953--291Chr12:19647142..19647166 (25 bp)
ATAGCAGCGTACCACCTCAAGCTGG
LOC_Os12g32610
OsAffx.31986.1.S1_at--241--9971Chr12:19647133..19647157 (25 bp)
TACCACCTCAAGCTGGTTGCTTGAA
LOC_Os12g32610
OsAffx.31986.1.S1_at--30--6671Chr12:19647118..19647142 (25 bp)
GTTGCTTGAAGCACTAGTACTTGGC
LOC_Os12g32610
OsAffx.31986.1.S1_at--461--3711Chr12:19647105..19647129 (25 bp)
CTAGTACTTGGCTTGTGAATTGTGA
LOC_Os12g32610
OsAffx.31986.1.S1_at--920--4651Chr12:19647079..19647103 (25 bp)
GCGTGCGTGGCAATGTGTATAGCAT
LOC_Os12g32610
OsAffx.31986.1.S1_at--195--6891Chr12:19646901..19646925 (25 bp)
GTATACCTTTTCCATCTTCTTTAGT
LOC_Os12g32610
OsAffx.31986.1.S1_at--510--9231Chr12:19646891..19646915 (25 bp)
TCCATCTTCTTTAGTATTTTTTCAC
LOC_Os12g32610
OsAffx.31986.1.S1_at--962--10351Chr12:19646874..19646898 (25 bp)
TTTTTCACAGTGCAATTTTGTCCTC
LOC_Os12g32610
OsAffx.31986.1.S1_at--1109--1111Chr12:19646866..19646890 (25 bp)
AGTGCAATTTTGTCCTCTAGTTAGT
LOC_Os12g32610
OsAffx.31986.1.S1_at--22--10411Chr12:19646859..19646883 (25 bp)
TTTTGTCCTCTAGTTAGTCACGGTA
LOC_Os12g32610
OsAffx.31986.1.S1_at--758--9251Chr12:19646854..19646878 (25 bp)
TCCTCTAGTTAGTCACGGTAATTTA
LOC_Os12g32610
Target Sequence 
ATAGCAGCGTACCACCTCAAGCTGGTTGCTTGAAGCACTAGTACTTGGCTTGTGAATTGTGATGCGTGCGTGGCAATGTG
TATAGCATTTTTTCCCCCTTTTTGTTTACTCCCTCCGTTTCACAATATAAGTCATTCTATCATTTCTCACATTTATATTT
ATATCTAAATTTATTAACATCAATATGAATATAAAAAATATTAGAATGATTTATATTATGAAACGGAGGAAGTATTTATT
AGTATACCTTTTCCATCTTCTTTAGTATTTTTTCACAGTGCAATTTTGTCCTCTAGTTAGTCACGGTAATTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31986.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis