Browse Element(s) Details


OsAffx.31985.1.S1_at

Description tigr:9640.m03166
TID=OsAffx.31985.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3258011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32530OsAffx.19935.1.S1_at10/1112+19604582..19605914hypothetical protein
LOC_Os12g32544Os.49130.1.S1_x_at11/1112+19614056..19621685expressed protein
LOC_Os12g32560OsAffx.19936.1.S1_at11/1112+19624136..19625193hypothetical protein
LOC_Os12g32580OsAffx.31985.1.S1_at11/1112+19628407..19631950expressed protein
LOC_Os12g32580Os.33256.1.S1_at1/1112+19628407..19631950expressed protein
LOC_Os12g32590Os.52293.1.S1_at11/1112+19634919..19639227NB-ARC domain containing protein, expressed
LOC_Os12g32600OsAffx.19937.1.S1_at11/1112+19643336..19645788hypothetical protein
LOC_Os12g32610OsAffx.31986.1.S1_at11/1112+19646824..19647784expressed protein
LOC_Os12g32620Os.7784.1.S1_at11/1112+19651676..19653551Pollen-specific protein SF3, putative, expressed
LOC_Os12g32630OsAffx.7769.1.S1_at10/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32630Os.26764.1.A1_at9/1112+19656304..19659365F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31985.1.S1_at--836--6071Chr12:19629507..19629531 (25 bp)
GAGTTTGATAGATCAGCCGCTGGAA
LOC_Os12g32580
OsAffx.31985.1.S1_at--935--1271Chr12:19629498..19629522 (25 bp)
AGATCAGCCGCTGGAAGAGCAGCAA
LOC_Os12g32580
OsAffx.31985.1.S1_at--946--5291Chr12:19629454..19629478 (25 bp)
GAAGGAAGCTAAGACATCATCAAAC
LOC_Os12g32580
OsAffx.31985.1.S1_at--259--5411Chr12:19629423..19629447 (25 bp)
GAACCAGTTCTTAAGGTAAAGTCAG
LOC_Os12g32580
OsAffx.31985.1.S1_at--863--7331Chr12:19629410..19629433 (24 bp)
GGTAAAGTCAGTTCCTAGATTAAAT
LOC_Os12g32580
OsAffx.31985.1.S1_at--873--5031Chr12:19629308..19629332 (25 bp)
GCAGATGGGATCGTAAATTCTTCGT
LOC_Os12g32580
OsAffx.31985.1.S1_at--462--3151Chr12:19629293..19629317 (25 bp)
AATTCTTCGTTGGTGTTGACCCTGC
LOC_Os12g32580
OsAffx.31985.1.S1_at--478--4191Chr12:19628995..19629298 (25 bp)
CCCTGCATCCTTGGCATTTATTGCA
LOC_Os12g32580
OsAffx.31985.1.S1_at--560--8491Chr12:19628984..19629287 (25 bp)
TGGCATTTATTGCATACACTAAGAA
LOC_Os12g32580
OsAffx.31985.1.S1_at--1050--8831Chr12:19628780..19628804 (25 bp)
TGATAATGGTAGACAAGAGCTTGAC
LOC_Os12g32580
OsAffx.31985.1.S1_at--379--4931Chr12:19628762..19628786 (25 bp)
GCTTGACAGCTCTTGATTTCAGGGA
LOC_Os12g32580
Target Sequence 
GAGTTTGATAGATCAGCCGCTGGAAGAGCAGCAAAAGCACAGATGAAAGCTATGAAGGAAGCTAAGACATCATCAAACCA
AGGAGAACCAGTTCTTAAGGTAAAGTCAGTTCCTAGATTAAATGGCAGATGGGATCGTAAATTCTTCGTTGGTGTTGACC
CTGCATCCTTGGCATTTATTGCATACACTAAGAAAAGGCTGATAATGGTAGACAAGAGCTTGACAGCTCTTGATTTCAGG
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31985.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis