Browse Element(s) Details


OsAffx.19935.1.S1_at

Description tigr:9640.m03161
TID=OsAffx.19935.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3253010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32480Os.54476.1.S1_at11/1112+19580421..19583289expressed protein
LOC_Os12g32499OsAffx.31982.1.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.2.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.1.S1_at10/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.51248.1.S1_at1/1112+19583773..19594400expressed protein
LOC_Os12g32520OsAffx.19934.1.S1_at11/1112+19599586..19601787hypothetical protein
LOC_Os12g32530OsAffx.19935.1.S1_at10/1112+19604582..19605914hypothetical protein
LOC_Os12g32544Os.49130.1.S1_x_at11/1112+19614056..19621685expressed protein
LOC_Os12g32560OsAffx.19936.1.S1_at11/1112+19624136..19625193hypothetical protein
LOC_Os12g32580OsAffx.31985.1.S1_at11/1112+19628407..19631950expressed protein
LOC_Os12g32580Os.33256.1.S1_at1/1112+19628407..19631950expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19935.1.S1_at--249--5411Chr12:19604629..19604653 (25 bp)
GAAGCGGGCTCTGGCAGCGGAACTA
LOC_Os12g32530
OsAffx.19935.1.S1_at--1017--3931NONE
CGGCGGTGGCGCGAAAATGCAAAAA
NONE
OsAffx.19935.1.S1_at--600--2251Chr12:19605662..19605686 (25 bp)
AAATATACCAATTCCACGTGAGAGG
LOC_Os12g32530
OsAffx.19935.1.S1_at--124--3311Chr12:19605697..19605721 (25 bp)
CACACAACGCGGTGCGGACTGCGGA
LOC_Os12g32530
OsAffx.19935.1.S1_at--973--7611Chr12:19605725..19605749 (25 bp)
GGGACCAACAGCTGGACCATTCCTG
LOC_Os12g32530
OsAffx.19935.1.S1_at--711--3911Chr12:19605736..19605760 (25 bp)
CTGGACCATTCCTGTGGCATGGGAG
LOC_Os12g32530
OsAffx.19935.1.S1_at--624--5491Chr12:19605769..19605793 (25 bp)
GAACAGCTGTATGGTCCGACGGCGT
LOC_Os12g32530
OsAffx.19935.1.S1_at--752--811Chr12:19605811..19605835 (25 bp)
ATGGTCCTACGCCACAGAAGCGTGG
LOC_Os12g32530
OsAffx.19935.1.S1_at--382--7551Chr12:19605843..19605867 (25 bp)
GTGGCGAGCCGAATCGTGCGATACC
LOC_Os12g32530
OsAffx.19935.1.S1_at--713--5251Chr12:19605853..19605877 (25 bp)
GAATCGTGCGATACCAAGTTACCAA
LOC_Os12g32530
OsAffx.19935.1.S1_at--360--4631Chr12:19605860..19605884 (25 bp)
GCGATACCAAGTTACCAACGCGATC
LOC_Os12g32530
Target Sequence 
GAAGCGGGCTCTGGCAGCGGAACTAGACGGAGGGGAGGTGGACGAGGTGGACCTCGGCCGCGCGAACCCGATGGCGGCGG
TGGCGCGAAAATGCAAAAATATACCAATTCCACGTGAGAGGAACGTGGGGACACACAACGCGGTGCGGACTGCGGAGAGG
GGACCAACAGCTGGACCATTCCTGTGGCATGGGAGGGAGCGTGGAACAGCTGTATGGTCCGACGGCGTGGGCGGGCGGCA
CCGCCATGGTCCTACGCCACAGAAGCGTGGCAACGCGGTGGCGAGCCGAATCGTGCGATACCAAGTTACCAACGCGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19935.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis