Browse Element(s) Details


Os.54476.1.S1_at

Description gb:AK105279.1
DB_XREF= gi:32990488
TID=Os.54476.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-143-G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B08, full insert sequence.
FL= gb:AK105279.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3248011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32450OsAffx.7768.1.S1_at11/1112+19550313..19556635expressed protein
LOC_Os12g32470Os.52827.1.S1_at10/1112+19568465..19573686expressed protein
LOC_Os12g32480Os.54476.1.S1_at11/1112+19580421..19583289expressed protein
LOC_Os12g32499OsAffx.31982.1.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.2.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.1.S1_at10/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.51248.1.S1_at1/1112+19583773..19594400expressed protein
LOC_Os12g32520OsAffx.19934.1.S1_at11/1112+19599586..19601787hypothetical protein
LOC_Os12g32530OsAffx.19935.1.S1_at10/1112+19604582..19605914hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54476.1.S1_at--1055--2031Chr12:19582694..19582715 (22 bp)
ACTTTAGAAGTCTCTCCTGCTGGGA
LOC_Os12g32480
Os.54476.1.S1_at--67--8651Chr12:19582711..19582735 (25 bp)
TGGGACTCTCCTGCTCGAGCATGGA
LOC_Os12g32480
Os.54476.1.S1_at--302--7711Chr12:19582773..19582797 (25 bp)
GGGTGACGGTACACGTGAGCCCATC
LOC_Os12g32480
Os.54476.1.S1_at--545--4531Chr12:19582791..19582815 (25 bp)
GCCCATCCAGCTTGAGACGACGAGG
LOC_Os12g32480
Os.54476.1.S1_at--475--2651Chr12:19583032..19583056 (25 bp)
AAGCCATGGCAGGAACGCGTTCGGC
LOC_Os12g32480
Os.54476.1.S1_at--640--9331Chr12:19583061..19583085 (25 bp)
TCGCCGCTGGTGACGAAGCCCCTGT
LOC_Os12g32480
Os.54476.1.S1_at--35--771Chr12:19583094..19583118 (25 bp)
ATGTGCGGCACACGCCCAGGAACCG
LOC_Os12g32480
Os.54476.1.S1_at--973--9151Chr12:19583144..19583168 (25 bp)
TGCGCTGCGATCATGCCGAGCAAGT
LOC_Os12g32480
Os.54476.1.S1_at--957--4071Chr12:19583160..19583184 (25 bp)
CGAGCAAGTCGTCCGGCACGCTGAT
LOC_Os12g32480
Os.54476.1.S1_at--166--4531Chr12:19583233..19583257 (25 bp)
GCCGCGGCCTGCAATTGCAACGGTT
LOC_Os12g32480
Os.54476.1.S1_at--970--9011Chr12:19583248..19583272 (25 bp)
TGCAACGGTTGAATTCTCGCACGCG
LOC_Os12g32480
Target Sequence 
ACTTTAGAAGTCTCTCCTGCTGGGACTCTCCTGCTCGAGCATGGAGACGGGATGCTGCTGACGACGACGGTGGACATGTC
TGGGGTGACGGTACACGTGAGCCCATCCAGCTTGAGACGACGAGGAAGGGGACTGATGAGTGGTGTCACGGCGCCGGCTA
GAGGGTCGATGAAGCAGGCCTCGTGGGAGGCGCCGACGGCGAGGAGGCGGCCGCTGGCGCCGATCACCATGGTCTGCGCG
GGGCCGGCGGCGAGGCTCGGCGGCCAGGGGCAGTCGCGGGTGGTGCCGGAGAAGACGAAGCGACTGTGAAGGAGCGGGTC
GTGGCGGTGGTGCGGGGCCAGAAGCCATGGCAGGAACGCGTTCGGCTTCGTCGCCGCTGGTGACGAAGCCCCTGTCTCCC
GCCATGTGCGGCACACGCCCAGGAACCGCACGAAATCGACCACGTCGTCGAGCTGCGCTGCGATCATGCCGAGCAAGTCG
TCCGGCACGCTGATGGACCACATCCCCGTCGCCGCGGAGGCGTCGTCGTCGTCGTCGTCGCCGCCGCGGCCTGCAATTGC
AACGGTTGAATTCTCGCACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis