Browse Element(s) Details


OsAffx.19934.1.S1_at

Description tigr:9640.m03160
TID=OsAffx.19934.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3252011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32480Os.54476.1.S1_at11/1112+19580421..19583289expressed protein
LOC_Os12g32499OsAffx.31982.1.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.2.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.1.S1_at10/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.51248.1.S1_at1/1112+19583773..19594400expressed protein
LOC_Os12g32520OsAffx.19934.1.S1_at11/1112+19599586..19601787hypothetical protein
LOC_Os12g32530OsAffx.19935.1.S1_at10/1112+19604582..19605914hypothetical protein
LOC_Os12g32544Os.49130.1.S1_x_at11/1112+19614056..19621685expressed protein
LOC_Os12g32560OsAffx.19936.1.S1_at11/1112+19624136..19625193hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19934.1.S1_at--888--5731Chr12:19600206..19600230 (25 bp)
GACTGGGTACTACAGCTCCATCTAT
LOC_Os12g32520
OsAffx.19934.1.S1_at--317--6211Chr12:19600232..19600256 (25 bp)
GAGGCTATGCAATGTCCGGTAAAAC
LOC_Os12g32520
OsAffx.19934.1.S1_at--851--6551Chr12:19600293..19600317 (25 bp)
GATTCTGGTATCACTACGGACTTGC
LOC_Os12g32520
OsAffx.19934.1.S1_at--657--9931Chr12:19600307..19600331 (25 bp)
TACGGACTTGCGACTTTTATCTCTT
LOC_Os12g32520
OsAffx.19934.1.S1_at--762--4431Chr12:19600346..19600370 (25 bp)
GCCATTGGAGTCGAGTTTACCTTGT
LOC_Os12g32520
OsAffx.19934.1.S1_at--705--7751Chr12:19600372..19600396 (25 bp)
GGTGATTGTTGCCACTACATTCCTC
LOC_Os12g32520
OsAffx.19934.1.S1_at--1132--711Chr12:19600427..19600451 (25 bp)
ATGATCACATCTATTTCTTCCGGGA
LOC_Os12g32520
OsAffx.19934.1.S1_at--738--10651Chr12:19600444..19600468 (25 bp)
TTCCGGGATAGCTGTTTGTATGCCT
LOC_Os12g32520
OsAffx.19934.1.S1_at--773--6911Chr12:19600461..19600485 (25 bp)
GTATGCCTACAAGTTCTCACTAGAG
LOC_Os12g32520
OsAffx.19934.1.S1_at--1044--851Chr12:19600495..19600519 (25 bp)
ATGGCTCCACCGATTAAGCTTGCAA
LOC_Os12g32520
OsAffx.19934.1.S1_at--184--9771Chr12:19600548..19600572 (25 bp)
TAATGCATTTATTGCCGGTCTCAGC
LOC_Os12g32520
Target Sequence 
GACTGGGTACTACAGCTCCATCTATGGAGGCTATGCAATGTCCGGTAAAACCCCTCTTCTTCAAGGATTTGCAGTGCTTG
GTGATGTGATTCTGGTATCACTACGGACTTGCGACTTTTATCTCTTCCGGTGTTCCACTTGCCATTGGAGTCGAGTTTAC
CTTGTTGGTGATTGTTGCCACTACATTCCTCTCAATGGAAGGGCGGTGTTCTCGGAGGAAGATGATCACATCTATTTCTT
CCGGGATAGCTGTTTGTATGCCTACAAGTTCTCACTAGAGGAGGGGAAGATGGCTCCACCGATTAAGCTTGCAAGTCTAT
ACGATGATTTCAGTGCTCATGGTAATGCATTTATTGCCGGTCTCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19934.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis