Browse Element(s) Details


OsAffx.31982.1.S1_at

Description tigr:9640.m03158
TID=OsAffx.31982.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3249911/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32470Os.52827.1.S1_at10/1112+19568465..19573686expressed protein
LOC_Os12g32480Os.54476.1.S1_at11/1112+19580421..19583289expressed protein
LOC_Os12g32499OsAffx.31982.1.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.2.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.1.S1_at10/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.51248.1.S1_at1/1112+19583773..19594400expressed protein
LOC_Os12g32520OsAffx.19934.1.S1_at11/1112+19599586..19601787hypothetical protein
LOC_Os12g32530OsAffx.19935.1.S1_at10/1112+19604582..19605914hypothetical protein
LOC_Os12g32544Os.49130.1.S1_x_at11/1112+19614056..19621685expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31982.1.S1_at--975--4271Chr12:19591985..19592238 (25 bp)
CCTGCACCTCTAAATTTAGGTCTGA
LOC_Os12g32499
OsAffx.31982.1.S1_at--85--10451Chr12:19592229..19592253 (25 bp)
TTAGGTCTGACCCTATTCCGTGAAA
LOC_Os12g32499
OsAffx.31982.1.S1_at--162--7811Chr12:19592232..19592256 (25 bp)
GGTCTGACCCTATTCCGTGAAAACA
LOC_Os12g32499
OsAffx.31982.1.S1_at--474--4511Chr12:19592237..19592261 (25 bp)
GACCCTATTCCGTGAAAACAGTATA
LOC_Os12g32499
OsAffx.31982.1.S1_at--933--7411Chr12:19592265..19592289 (25 bp)
GTGTTAACTTTTAGCAAAAATGCCA
LOC_Os12g32499
OsAffx.31982.1.S1_at--8--4451Chr12:19592286..19592310 (25 bp)
GCCATTTATGCCCTTTATGGAGTGT
LOC_Os12g32499
OsAffx.31982.1.S1_at--20--10151Chr12:19592292..19592316 (25 bp)
TATGCCCTTTATGGAGTGTACGGTG
LOC_Os12g32499
OsAffx.31982.1.S1_at--784--4291Chr12:19592297..19592321 (25 bp)
CCTTTATGGAGTGTACGGTGGAATC
LOC_Os12g32499
OsAffx.31982.1.S1_at--563--8511Chr12:19592315..19592339 (25 bp)
TGGAATCAAAATACCCTCTGCACTG
LOC_Os12g32499
OsAffx.31982.1.S1_at--102--351Chr12:19592319..19592343 (25 bp)
ATCAAAATACCCTCTGCACTGGCCT
LOC_Os12g32499
OsAffx.31982.1.S1_at--489--4211Chr12:19592358..19592382 (25 bp)
CCGCGCCTCCAAGATGAGATGGGTC
LOC_Os12g32499
Target Sequence 
CCTGCACCTCTAAATTTAGGTCTGACCCTATTCCGTGAAAACAGTATAACAGTGTTAACTTTTAGCAAAAATGCCATTTA
TGCCCTTTATGGAGTGTACGGTGGAATCAAAATACCCTCTGCACTGGCCTCGACGAGGTATCAGCCGCGCCTCCAAGATG
AGATGGGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31982.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis