Browse Element(s) Details


Os.51248.1.S1_at

Description gb:AK062331.1
DB_XREF= gi:32972349
TID=Os.51248.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51248 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-101-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-D10, full insert sequence.
FL= gb:AK062331.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g324991/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32470Os.52827.1.S1_at10/1112+19568465..19573686expressed protein
LOC_Os12g32480Os.54476.1.S1_at11/1112+19580421..19583289expressed protein
LOC_Os12g32499OsAffx.31982.1.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.2.S1_at11/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.53047.1.S1_at10/1112+19583773..19594400expressed protein
LOC_Os12g32499Os.51248.1.S1_at1/1112+19583773..19594400expressed protein
LOC_Os12g32520OsAffx.19934.1.S1_at11/1112+19599586..19601787hypothetical protein
LOC_Os12g32530OsAffx.19935.1.S1_at10/1112+19604582..19605914hypothetical protein
LOC_Os12g32544Os.49130.1.S1_x_at11/1112+19614056..19621685expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51248.1.S1_at--697--4231Chr05:23534912..23534936 (25 bp)
CCGAGCCGCCGCTGATAGAGGATAA
NONE
Os.51248.1.S1_at--160--4091Chr05:23534913..23534937 (25 bp)
CGAGCCGCCGCTGATAGAGGATAAG
NONE
Os.51248.1.S1_at--564--6111Chr05:23534972..23534996 (25 bp)
GAGTGATAGAGGATAGATTGACGTA
NONE
Os.51248.1.S1_at--1010--11Chr05:23534988..23535012 (25 bp)
ATTGACGTATTAAGGGGCATTTTCG
NONE
Os.51248.1.S1_at--279--7591Chr05:23535002..23535026 (25 bp)
GGGCATTTTCGTCATTTAGGATTGT
NONE
Os.51248.1.S1_at--6--4951Chr05:23535004..23535028 (25 bp)
GCATTTTCGTCATTTAGGATTGTAA
NONE
Os.51248.1.S1_at--900--9571Chr05:23535031..23535055 (25 bp)
TCTTGTTTTCTATTTTTTCTAAGTG
NONE
Os.51248.1.S1_at--737--10311Chr05:23535046..23535070 (25 bp)
TTTCTAAGTGAAATACTCACAGTGT
NONE
Os.51248.1.S1_at--435--3314Chr05:23535063..23535087 (25 bp)
CACAGTGTAGTGAAAGTAGGGTCAG
NONE
Os.51248.1.S1_at--831--2832Chr05:23535076..23535100 (25 bp)
AAGTAGGGTCAGACGGCAACTTCAA
NONE
Os.51248.1.S1_at--460--1034Chr12:19592472..19592543 (25 bp)
AGGGTCAGACGGCAACTTCAAATTG
LOC_Os12g32499
Target Sequence 
CCGAGCCGCCGCTGATAGAGGATAAGAATGATAGATGATAGAGAGAGAGAGGATAGGAATGAGTGATAGAGGATAGATTG
ACGTATTAAGGGGCATTTTCGTCATTTAGGATTGTAAATTCTTGTTTTCTATTTTTTCTAAGTGAAATACTCACAGTGTA
GTGAAAGTAGGGTCAGACGGCAACTTCAAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis