Browse Element(s) Details


OsAffx.19936.1.S1_at

Description tigr:9640.m03164
TID=OsAffx.19936.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3256011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32520OsAffx.19934.1.S1_at11/1112+19599586..19601787hypothetical protein
LOC_Os12g32530OsAffx.19935.1.S1_at10/1112+19604582..19605914hypothetical protein
LOC_Os12g32544Os.49130.1.S1_x_at11/1112+19614056..19621685expressed protein
LOC_Os12g32560OsAffx.19936.1.S1_at11/1112+19624136..19625193hypothetical protein
LOC_Os12g32580OsAffx.31985.1.S1_at11/1112+19628407..19631950expressed protein
LOC_Os12g32580Os.33256.1.S1_at1/1112+19628407..19631950expressed protein
LOC_Os12g32590Os.52293.1.S1_at11/1112+19634919..19639227NB-ARC domain containing protein, expressed
LOC_Os12g32600OsAffx.19937.1.S1_at11/1112+19643336..19645788hypothetical protein
LOC_Os12g32610OsAffx.31986.1.S1_at11/1112+19646824..19647784expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19936.1.S1_at--853--2531Chr12:19624184..19624208 (25 bp)
AACTCACCACTTCGCCAGGAGCAGG
LOC_Os12g32560
OsAffx.19936.1.S1_at--184--10651Chr12:19624194..19624218 (25 bp)
TTCGCCAGGAGCAGGGCCGACCAGA
LOC_Os12g32560
OsAffx.19936.1.S1_at--146--4111Chr12:19624229..19624253 (25 bp)
CGACACACGGGTGAAGTCGACAGGC
LOC_Os12g32560
OsAffx.19936.1.S1_at--89--8391Chr12:19624382..19624855 (25 bp)
GGCGAGCGGCACACAAACTTAGGTT
LOC_Os12g32560
OsAffx.19936.1.S1_at--37--3674Chr12:19624848..19624872 (25 bp)
CTTAGGTTTCGGCAGGAACATCAGC
LOC_Os12g32560
OsAffx.19936.1.S1_at--12--7571Chr12:19624880..19624904 (25 bp)
GGGCGCCTCACGGTATACCATACGA
LOC_Os12g32560
OsAffx.19936.1.S1_at--55--7872Chr12:19624891..19624915 (25 bp)
GGTATACCATACGATTTGCACGGTC
LOC_Os12g32560
OsAffx.19936.1.S1_at--646--5531Chr12:19624997..19625021 (25 bp)
GAAACCGAAAGCTTGGGCAACAGGC
LOC_Os12g32560
OsAffx.19936.1.S1_at--60--4211Chr12:19625060..19625084 (25 bp)
CCCCAAGGACGAAAGCCATGGCTTG
LOC_Os12g32560
OsAffx.19936.1.S1_at--404--4431Chr12:19625074..19625098 (25 bp)
GCCATGGCTTGGGAGTACACGTGCT
LOC_Os12g32560
OsAffx.19936.1.S1_at--155--7331Chr12:19625094..19625118 (25 bp)
GTGCTTCGCCGACCAAGGGCCCTGT
LOC_Os12g32560
Target Sequence 
AACTCACCACTTCGCCAGGAGCAGGGCCGACCAGAGCAGGCGGGGCGACACACGGGTGAAGTCGACAGGCGGGCGGAGCA
TCGGTGGCGGGTGGAGCAGACCAGTGGAGCCGAGCGGGCGAAGCGGCGGCGCACGAAGTCGGCAAGCAGGCGGAGCAGGC
GGCGGCAGGCGAAGCCAGTAGGTGGGCGGAGCGCTGGTGGCGAGCGGCACACAAACTTAGGTTTCGGCAGGAACATCAGC
CGAAAGGGGGCGCCTCACGGTATACCATACGATTTGCACGGTCTCGGCCGAAGCTCCCTACTCACCCTTGCCCGTGAGGG
GCTTGTTGGAGGTATACCGCAAAGGGCCTTCGGCCGGACCTGCCGAAACCGAAAGCTTGGGCAACAGGCTCAGACCGGAG
GCGAGCGGCGAAGGTCGAAGAGGAAAACCCCAAGGACGAAAGCCATGGCTTGGGAGTACACGTGCTTCGCCGACCAAGGG
CCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19936.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis