Browse Element(s) Details


Os.52293.1.S1_at

Description gb:AK066140.1
DB_XREF= gi:32976158
TID=Os.52293.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.52293 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013102C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013055F19, full insert sequence.
FL= gb:AK066140.1 gb:AK098997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3259011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32544Os.49130.1.S1_x_at11/1112+19614056..19621685expressed protein
LOC_Os12g32560OsAffx.19936.1.S1_at11/1112+19624136..19625193hypothetical protein
LOC_Os12g32580OsAffx.31985.1.S1_at11/1112+19628407..19631950expressed protein
LOC_Os12g32580Os.33256.1.S1_at1/1112+19628407..19631950expressed protein
LOC_Os12g32590Os.52293.1.S1_at11/1112+19634919..19639227NB-ARC domain containing protein, expressed
LOC_Os12g32600OsAffx.19937.1.S1_at11/1112+19643336..19645788hypothetical protein
LOC_Os12g32610OsAffx.31986.1.S1_at11/1112+19646824..19647784expressed protein
LOC_Os12g32620Os.7784.1.S1_at11/1112+19651676..19653551Pollen-specific protein SF3, putative, expressed
LOC_Os12g32630OsAffx.7769.1.S1_at10/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32630Os.26764.1.A1_at9/1112+19656304..19659365F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0009814biological_processdefense response to pathogen, incompatible interaction
GO:0005737cellular_componentcytoplasm
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52293.1.S1_at--844--1491Chr12:19638634..19638658 (25 bp)
AGCACAGCTTTCCTCAGCTGGGATA
LOC_Os12g32590
Os.52293.1.S1_at--579--6431Chr12:19638665..19638689 (25 bp)
GATCAGTAGCCTAACCAACCTGGAG
LOC_Os12g32590
Os.52293.1.S1_at--475--2631Chr12:19638681..19638705 (25 bp)
AACCTGGAGGCATTCCGAATCGAGC
LOC_Os12g32590
Os.52293.1.S1_at--1004--5251Chr12:19638697..19638721 (25 bp)
GAATCGAGCGCGGTGCTTTTTCCAA
LOC_Os12g32590
Os.52293.1.S1_at--1065--7231Chr12:19638726..19638750 (25 bp)
GTCCGCTTTTCAGTACACTATTGCA
LOC_Os12g32590
Os.52293.1.S1_at--126--1551Chr12:19638762..19638786 (25 bp)
AGCATCATCGATGTCCTGGAGCATA
LOC_Os12g32590
Os.52293.1.S1_at--240--311Chr12:19638784..19638808 (25 bp)
ATACTACGAGCCTGCAGGTCCTGAA
LOC_Os12g32590
Os.52293.1.S1_at--1088--731Chr12:19638862..19638886 (25 bp)
ATGTTTCTGTTATCACTATGGCTTA
LOC_Os12g32590
Os.52293.1.S1_at--387--6431Chr12:19638937..19638961 (25 bp)
GATCAGCGTTGATTTGGTACTCTCT
LOC_Os12g32590
Os.52293.1.S1_at--1131--8571Chr12:19638951..19638975 (25 bp)
TGGTACTCTCTGGATGTCAAAGCAT
LOC_Os12g32590
Os.52293.1.S1_at--910--4931Chr12:19638972..19638996 (25 bp)
GCATATCGTTTTGGTCGTGTTTCAA
LOC_Os12g32590
Target Sequence 
AGCACAGCTTTCCTCAGCTGGGATATTTAAAGATCAGTAGCCTAACCAACCTGGAGGCATTCCGAATCGAGCGCGGTGCT
TTTTCCAACCTCGTCCGCTTTTCAGTACACTATTGCAGTAAGTTTCGTAGCATCATCGATGTCCTGGAGCATACTACGAG
CCTGCAGGTCCTGAAGCTCAAGGGAATGGAACTTCTACCNGGATATTACTGATTCTTGTAGAAACAAAAATGTTTCTGTT
ATCACTATGGCTTATTAGCTAGAGTGCTAATTTGGTAAAATTTCTGCGTCCATAATTGGGNCAAGATCAGCGTTGATTTG
GTACTCTCTGGATGTCAAAGCATATCGTTTTGGTCGTGTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis