Browse Element(s) Details


Os.7337.3.S1_x_at

Description gb:AK105287.1
DB_XREF= gi:32990496
TID=Os.7337.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7337 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-149-E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-E12, full insert sequence.
FL= gb:AK105287.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3266011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32620Os.7784.1.S1_at11/1112+19651676..19653551Pollen-specific protein SF3, putative, expressed
LOC_Os12g32630OsAffx.7769.1.S1_at10/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32630Os.26764.1.A1_at9/1112+19656304..19659365F-box domain containing protein, expressed
LOC_Os12g32640Os.54777.1.S1_at11/1112+19666321..19669899Haemolysin-III related family protein, expressed
LOC_Os12g32650Os.7337.1.S2_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S3_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S1_at11/1112+19672493..19679518expressed protein
LOC_Os12g32660Os.7337.3.S1_x_at11/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660Os.7337.2.S1_at10/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_x_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32670Os.53078.1.S1_at11/1112+19687898..19690723NB-ARC domain containing protein, expressed
LOC_Os12g32680OsAffx.7770.1.S1_at11/1112+19701881..19705582NB-ARC domain containing protein
LOC_Os12g32690OsAffx.16381.3.S1_x_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.3.S1_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.1.S1_x_at8/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.2.S1_x_at4/1112+19706168..19714591hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7337.3.S1_x_at--175--2231Chr12:19678721..19678745 (25 bp)
ACAATGGAGTCCAACTTCCGGTTTG
LOC_Os12g32660
Os.7337.3.S1_x_at--1115--10151Chr12:19678706..19678730 (25 bp)
TTCCGGTTTGGATCGAGACTTCATT
LOC_Os12g32660
Os.7337.3.S1_x_at--702--5691Chr12:19678690..19678714 (25 bp)
GACTTCATTTCTCATCCATTTGGTG
LOC_Os12g32660
Os.7337.3.S1_x_at--889--7991Chr12:19678637..19678661 (25 bp)
GGAGGACCCTGCCATCATTTAAGGA
LOC_Os12g32660
Os.7337.3.S1_x_at--189--5431Chr12:19678584..19678608 (25 bp)
GAACACCTTTTCCAATTAGGCTCGG
LOC_Os12g32660
Os.7337.3.S1_x_at--688--9731Chr12:19678502..19678526 (25 bp)
TCAATACGCTGATCGTCCGGTGGTG
LOC_Os12g32660
Os.7337.3.S1_x_at--911--7711Chr12:19678484..19678508 (25 bp)
GGTGGTGCCCTAACCTGAAGAAACT
LOC_Os12g32660
Os.7337.3.S1_x_at--1100--9051Chr12:19678456..19678480 (25 bp)
TGCTTTACCTTGTACCCTTGAGAAA
LOC_Os12g32660
Os.7337.3.S1_x_at--231--9051Chr12:19678408..19678432 (25 bp)
TGCAGTTCTCCCTAGATTACATCAG
LOC_Os12g32660
Os.7337.3.S1_x_at--1121--10411Chr12:19678359..19678383 (25 bp)
TTATCAGTAGATTCGCGTCTTTCTC
LOC_Os12g32660
Os.7337.3.S1_x_at--383--4651Chr12:19678345..19678369 (25 bp)
GCGTCTTTCTCTTTTGCACATTGAA
LOC_Os12g32660
Target Sequence 
ACAATGGAGTCCAACTTCCGGTTTGGATCGAGACTTCATTTCTCATCCATTTGGTGTCACTTGAGCTTCAATACTGCATG
GAATGGAGGACCCTGCCATCATTTAAGGAGCTTAGTTCACTGAAGTATCTAAAGCTGGAACACCTTTTCCAATTAGGCTC
GGTGATTGAGGAGCAATCTGGGAGCATAGAATCAGATAATGCATTTCTGCCCCCATTGCTCAATACGCTGATCGTCCGGT
GGTGCCCTAACCTGAAGAAACTCCCTGCTTTACCTTGTACCCTTGAGAAATTAATAATAAGGCATGTTGGGCTTGCAGTT
CTCCCTAGATTACATCAGGCATATGCTAGCACATGTGAATCATTATCAGTAGATTCGCGTCTTTCTCTTTTGCACATTGA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7337.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis