Browse Element(s) Details


Os.53078.1.S1_at

Description gb:AK070722.1
DB_XREF= gi:32980745
TID=Os.53078.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53078 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023057B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057B03, full insert sequence.
FL= gb:AK070722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3267011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32640Os.54777.1.S1_at11/1112+19666321..19669899Haemolysin-III related family protein, expressed
LOC_Os12g32650Os.7337.1.S2_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S3_at11/1112+19672493..19679518expressed protein
LOC_Os12g32650Os.7337.1.S1_at11/1112+19672493..19679518expressed protein
LOC_Os12g32660Os.7337.3.S1_x_at11/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660Os.7337.2.S1_at10/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_x_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32670Os.53078.1.S1_at11/1112+19687898..19690723NB-ARC domain containing protein, expressed
LOC_Os12g32680OsAffx.7770.1.S1_at11/1112+19701881..19705582NB-ARC domain containing protein
LOC_Os12g32690OsAffx.16381.3.S1_x_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.3.S1_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.1.S1_x_at8/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.2.S1_x_at4/1112+19706168..19714591hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53078.1.S1_at--991--191Chr12:19688339..19688363 (25 bp)
ATTTCTGGATATAACGGCACACGAC
LOC_Os12g32670
Os.53078.1.S1_at--1127--5111Chr12:19688323..19688347 (25 bp)
GCACACGACCTCCATTGTGGATGGA
LOC_Os12g32670
Os.53078.1.S1_at--1039--7611Chr12:19688245..19688269 (25 bp)
GGGATAAACTTCCTCCATTTGGATA
LOC_Os12g32670
Os.53078.1.S1_at--1086--4851Chr12:19688165..19688189 (25 bp)
GCTAGTTCATCCTACAGCACTGTTG
LOC_Os12g32670
Os.53078.1.S1_at--946--1351Chr12:19688129..19688153 (25 bp)
AGAGACACCAGTCCTGATGTTCTGC
LOC_Os12g32670
Os.53078.1.S1_at--144--3171Chr12:19688075..19688099 (25 bp)
AATTGCCTGGGCCTGTCAGAGCTAC
LOC_Os12g32670
Os.53078.1.S1_at--913--9571Chr12:19688060..19688084 (25 bp)
TCAGAGCTACCCAGTTTACCTTTTA
LOC_Os12g32670
Os.53078.1.S1_at--623--2851Chr12:19687998..19688022 (25 bp)
AAGTCTGCCAACCATGTGTACTCAT
LOC_Os12g32670
Os.53078.1.S1_at--537--5751Chr12:19687963..19687987 (25 bp)
GACGTGTTTCTTTGGTGGAGTCACA
LOC_Os12g32670
Os.53078.1.S1_at--142--8551Chr12:19687948..19687972 (25 bp)
TGGAGTCACAGCTCTCTATTTTGAA
LOC_Os12g32670
Os.53078.1.S1_at--901--9571Chr12:19687916..19687940 (25 bp)
TCTTGCAATCTTCTGGTTTCTCTAA
LOC_Os12g32670
Target Sequence 
ATTTCTGGATATAACGGCACACGACCTCCATTGTGGATGGAATCTAAGTATTTTTCCAATTTGGTATATCTGAAGCTTGA
TGGATGTGTGGAATGGGATAAACTTCCTCCATTTGGATATCTATGGACACTAAAGCATCTGTTTTTGAAGAACCTACCGA
AATTGGAATATATTGCTAGTTCATCCTACAGCACTGTTGTGTATGGATACAGAGACACCAGTCCTGATGTTCTGCCTCCT
CATCTGATCACTTTTGTTGTGAAGAATTGCCTGGGCCTGTCAGAGCTACCCAGTTTACCTTTTAGTCTGAGGTATTTGGA
CATAGATAGAGTTGGAATGTCAAGTCTGCCAACCATGTGTACTCATATGGGGCGAAGACGTGTTTCTTTGGTGGAGTCAC
AGCTCTCTATTTTGAATGTTGAGTCTTGCAATCTTCTGGTTTCTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53078.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis