Browse Element(s) Details


OsAffx.16381.3.S1_at

Description tigr:9640.m03180
TID=OsAffx.16381.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3269011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32660Os.7337.3.S1_x_at11/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660Os.7337.2.S1_at10/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_x_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32660OsAffx.29362.1.S1_at1/1112+19675539..19681634NB-ARC domain containing protein, expressed
LOC_Os12g32670Os.53078.1.S1_at11/1112+19687898..19690723NB-ARC domain containing protein, expressed
LOC_Os12g32680OsAffx.7770.1.S1_at11/1112+19701881..19705582NB-ARC domain containing protein
LOC_Os12g32690OsAffx.16381.3.S1_x_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.3.S1_at11/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.1.S1_x_at8/1112+19706168..19714591hypothetical protein
LOC_Os12g32690OsAffx.16381.2.S1_x_at4/1112+19706168..19714591hypothetical protein
LOC_Os12g32700OsAffx.19938.1.S1_at10/1112+19719294..19720746hypothetical protein
LOC_Os12g32700OsAffx.19938.1.S1_x_at10/1112+19719294..19720746hypothetical protein
LOC_Os12g32710OsAffx.7771.1.S1_x_at11/1112+19725616..19729383NB-ARC domain containing protein, expressed
LOC_Os12g32720Os.47463.1.S1_x_at6/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g32720Os.14491.2.S1_x_at4/1112+19735362..19739064transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16381.3.S1_at--869--3732Chr10:11733565..11733589 (25 bp)
CTACAATGATCCAACCAGTGGAAAT
NONE
OsAffx.16381.3.S1_at--1065--2212Chr10:11733567..11733591 (25 bp)
ACAATGATCCAACCAGTGGAAATGA
NONE
OsAffx.16381.3.S1_at--553--6351Chr12:19706365..19706389 (25 bp)
GATCCAACCAGTGGAAATGAAGCCA
LOC_Os12g32690
OsAffx.16381.3.S1_at--240--9212Chr10:11733574..11733645 (25 bp)
TCCAACCAGTGGAAATGAAGCCAAT
NONE
OsAffx.16381.3.S1_at--857--3231Chr12:19706361..19706385 (25 bp)
CAACCAGTGGAAATGAAGCCAATCC
LOC_Os12g32690
OsAffx.16381.3.S1_at--725--4111Chr12:19706237..19706261 (25 bp)
CGAAGGAGGCGCACCGTCAGTGCTA
LOC_Os12g32690
OsAffx.16381.3.S1_at--71--891Chr12:19706231..19706255 (25 bp)
AGGCGCACCGTCAGTGCTACGGCAA
LOC_Os12g32690
OsAffx.16381.3.S1_at--1062--4571Chr12:19706229..19706253 (25 bp)
GCGCACCGTCAGTGCTACGGCAACA
LOC_Os12g32690
OsAffx.16381.3.S1_at--628--5071Chr12:19706227..19706251 (25 bp)
GCACCGTCAGTGCTACGGCAACAGC
LOC_Os12g32690
OsAffx.16381.3.S1_at--408--2491Chr12:19706208..19706232 (25 bp)
AACAGCTTCCAGTCCACCTTCATGA
LOC_Os12g32690
OsAffx.16381.3.S1_at--1150--3392Chr10:11733731..11734070 (25 bp)
CAGCTTCCAGTCCACCTTCATGAAG
NONE
Target Sequence 
CTACAATGATCCAACCAGTGGAAATGAAGCCAATCCAGAGGCTCTCATAGAGTATGAAAACAAAGTGCATCGTCTCCCAA
TTATCAAAAGATTCCAGTGGCTGCCCGGCAGGATCGACTCTGATTATGGCCCAATCGAAGGAGGCGCACCGTCAGTGCTA
CGGCAACAGCTTCCAGTCCACCTTCATGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16381.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis