Browse Element(s) Details

OsAffx.28176.1.S1_at

Description

tigr:9634.m04749
TID=OsAffx.28176.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 164437 acidic ribosomal protein P3a
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48780	9/11	60S acidic ribosomal protein P3, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48740	OsAffx.28175.1.S1_s_at	11/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48740	OsAffx.28175.1.S1_at	10/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48740	OsAffx.28175.1.S1_x_at	10/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48750	Os.39027.1.S1_s_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.139.1.S1_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.39027.1.S1_at	4/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48760	Os.26461.1.S1_at	11/11	6	+	29507826..29514167	UDP-sugar pyrophospharylase, putative, expressed
LOC_Os06g48770	Os.11281.1.S2_at	11/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S1_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S3_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48780	Os.12291.1.S1_at	11/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48780	OsAffx.28176.1.S1_at	9/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48790	OsAffx.5148.1.S1_x_at	11/11	6	+	29529047..29532722	hypothetical protein
LOC_Os06g48790	OsAffx.19937.1.S1_at	1/11	6	+	29529047..29532722	hypothetical protein
LOC_Os06g48800	Os.57530.1.S1_at	11/11	6	+	29533236..29535555	Cation transport protein, expressed
LOC_Os06g48800	Os.57530.1.S1_x_at	11/11	6	+	29533236..29535555	Cation transport protein, expressed
LOC_Os06g48800	Os.19896.2.S1_x_at	8/11	6	+	29533236..29535555	Cation transport protein, expressed
LOC_Os06g48810	Os.2617.2.S1_a_at	11/11	6	+	29537942..29540221	high-affinity sodium transporter, putative, expressed
LOC_Os06g48820	NA	NA	6	+	29546213..29546692	retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification

GO id	Type	Name
GO:0006414	biological_process	translational elongation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28176.1.S1_at--664--433	1	NONE	CCAGCTGGATCTGAATAGCACATTT	NONE
OsAffx.28176.1.S1_at--626--641	1	Chr06:29527487..29527511 (25 bp)	GATCTGAATAGCACATTTGTTCCAG	LOC_Os06g48780
OsAffx.28176.1.S1_at--811--511	1	Chr06:29527477..29527501 (25 bp)	GCACATTTGTTCCAGATATGCGATA	LOC_Os06g48780
OsAffx.28176.1.S1_at--122--881	1	Chr06:29527470..29527494 (25 bp)	TGTTCCAGATATGCGATATTTTGCA	LOC_Os06g48780
OsAffx.28176.1.S1_at--221--5	1	Chr06:29527163..29527470 (25 bp)	ATTGATTGGTAGGTGGATATGGTTC	LOC_Os06g48780
OsAffx.28176.1.S1_at--104--651	1	Chr06:29527148..29527172 (25 bp)	GATATGGTTCTTGGTTAGATCCCAG	LOC_Os06g48780
OsAffx.28176.1.S1_at--751--787	1	Chr06:29527143..29527167 (25 bp)	GGTTCTTGGTTAGATCCCAGAAAAT	LOC_Os06g48780
OsAffx.28176.1.S1_at--310--341	1	Chr06:29527126..29527150 (25 bp)	CAGAAAATATCTGTGGGCTTTGACA	LOC_Os06g48780
OsAffx.28176.1.S1_at--1076--23	1	Chr06:29527120..29527144 (25 bp)	ATATCTGTGGGCTTTGACACAAAGC	LOC_Os06g48780
OsAffx.28176.1.S1_at--751--1059	1	Chr06:29527110..29527131 (22 bp)	TTGACACAAAGCTCACCTTAGTGAT	LOC_Os06g48780
OsAffx.28176.1.S1_at--704--483	1	NONE	GCTCACCTTAGTGATCATTGGTGCC	NONE

Target Sequence

CCAGCTGGATCTGAATAGCACATTTGTTCCAGATATGCGATATTTTGCATTGATTGGTAGGTGGATATGGTTCTTGGTTA
GATCCCAGAAAATATCTGTGGGCTTTGACACAAAGCTCACCTTAGTGATCATTGGTGCC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis