Browse Element(s) Details

Description

tigr:9634.m04744
TID=OsAffx.28175.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48740	10/11	hypothetical protein
LOC_Os03g52210	5/11	retrotransposon protein, putative, unclassified, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48720	Os.54979.1.S1_at	11/11	6	+	29476951..29479907	Cadmium/zinc-transporting ATPase 4, putative, expressed
LOC_Os06g48730	NA	NA	6	+	29496452..29497009	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g48740	OsAffx.28175.1.S1_s_at	11/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48740	OsAffx.28175.1.S1_at	10/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48740	OsAffx.28175.1.S1_x_at	10/11	6	+	29500753..29501837	hypothetical protein
LOC_Os06g48750	Os.39027.1.S1_s_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.139.1.S1_at	11/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750	Os.39027.1.S1_at	4/11	6	+	29502776..29506317	Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48760	Os.26461.1.S1_at	11/11	6	+	29507826..29514167	UDP-sugar pyrophospharylase, putative, expressed
LOC_Os06g48770	Os.11281.1.S2_at	11/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S1_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48770	Os.11281.1.S3_at	10/11	6	+	29515245..29522984	beta-lactamase family protein, expressed
LOC_Os06g48780	Os.12291.1.S1_at	11/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed
LOC_Os06g48780	OsAffx.28176.1.S1_at	9/11	6	+	29526365..29527955	60S acidic ribosomal protein P3, putative, expressed

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.28175.1.S1_at--326--353	1	NONE	CATCGACAAGGAAGAACCCAACATT	NONE
OsAffx.28175.1.S1_at--1138--273	1	Chr06:29501054..29501077 (24 bp)	AAGAACCCAACATTAGGATAATGGG	LOC_Os06g48740
OsAffx.28175.1.S1_at--946--645	1	Chr06:29501069..29501093 (25 bp)	GATAATGGGTGATGCTCCGGTGCAC	LOC_Os06g48740
OsAffx.28175.1.S1_at--1016--35	3	Chr06:29501070..29501094 (25 bp)	ATAATGGGTGATGCTCCGGTGCACT	LOC_Os06g48740
OsAffx.28175.1.S1_at--1119--975	2	Chr06:29501071..29501095 (25 bp)	TAATGGGTGATGCTCCGGTGCACTC	LOC_Os06g48740
OsAffx.28175.1.S1_at--898--297	2	Chr06:29501072..29501096 (25 bp)	AATGGGTGATGCTCCGGTGCACTCT	LOC_Os06g48740
OsAffx.28175.1.S1_at--579--81	2	Chr06:29501073..29501097 (25 bp)	ATGGGTGATGCTCCGGTGCACTCTA	LOC_Os06g48740
OsAffx.28175.1.S1_at--581--863	3	Chr06:29501074..29501098 (25 bp)	TGGGTGATGCTCCGGTGCACTCTAC	LOC_Os06g48740
OsAffx.28175.1.S1_at--1161--379	1	Chr06:29501142..29501559 (25 bp)	TTAAAAGGGCAGTGTCGGAGGAATC	LOC_Os06g48740
OsAffx.28175.1.S1_at--374--981	1	Chr06:29501143..29501560 (25 bp)	TAAAAGGGCAGTGTCGGAGGAATCA	LOC_Os06g48740
OsAffx.28175.1.S1_at--140--503	1	Chr06:29501545..29501567 (23 bp)	GCAGTGTCGGAGGAATCAGCCATTA	LOC_Os06g48740

Target Sequence

CATCGACAAGGAAGAACCCAACATTAGGATAATGGGTGATGCTCCGGTGCACTCTACTTGCAGTATTCTACTACAAGTAG
AATTAATCTCGACCGTTTATTTAAAAGGGCAGTGTCGGAGGAATCAGCCATTA

Expression Profiles

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project: