Browse Element(s) Details


Os.54979.1.S1_at

Description gb:AK107235.1
DB_XREF= gi:32992444
TID=Os.54979.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54979 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-125-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-125-E11, full insert sequence.
FL= gb:AK107235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4872011/11Cadmium/zinc-transporting ATPase 4, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48690OsAffx.15990.1.S1_at11/116+29459033..29459946hypothetical protein
LOC_Os06g48700Os.7468.1.S1_at11/116+29461290..29466298expressed protein
LOC_Os06g48710Os.20602.2.S1_x_at9/116+29467259..29469439hAT family dimerisation domain containing protein
LOC_Os06g48720Os.54979.1.S1_at11/116+29476951..29479907Cadmium/zinc-transporting ATPase 4, putative, expressed
LOC_Os06g48730NANA6+29496452..29497009transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g48740OsAffx.28175.1.S1_s_at11/116+29500753..29501837hypothetical protein
LOC_Os06g48740OsAffx.28175.1.S1_at10/116+29500753..29501837hypothetical protein
LOC_Os06g48740OsAffx.28175.1.S1_x_at10/116+29500753..29501837hypothetical protein
LOC_Os06g48750Os.39027.1.S1_s_at11/116+29502776..29506317Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750Os.139.1.S1_at11/116+29502776..29506317Eukaryotic initiation factor 4A, putative, expressed
LOC_Os06g48750Os.39027.1.S1_at4/116+29502776..29506317Eukaryotic initiation factor 4A, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006829biological_processzinc ion transport
GO:0015691biological_processcadmium ion transport
GO:0005886cellular_componentplasma membrane
GO:0005385molecular_functionzinc ion transporter activity
GO:0015086molecular_functioncadmium ion transporter activity
GO:0015434molecular_functioncadmium-transporting ATPase activity
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54979.1.S1_at--493--6491Chr06:29477415..29477439 (25 bp)
GATACCTGTTCTACCAGTGTGACAA
LOC_Os06g48720
Os.54979.1.S1_at--936--1471Chr06:29477364..29477388 (25 bp)
AGCAAGTTTCTTCACGAGGACCAAT
LOC_Os06g48720
Os.54979.1.S1_at--686--5031Chr06:29477311..29477335 (25 bp)
GCAGAAATCCATCTCTCAAAAGTTT
LOC_Os06g48720
Os.54979.1.S1_at--1014--7151Chr06:29477284..29477308 (25 bp)
GTCTCACTTGCATAAACTTTTGCTT
LOC_Os06g48720
Os.54979.1.S1_at--377--4731Chr06:29477206..29477230 (25 bp)
GCTGTGATGCTAATATACGTGCTAG
LOC_Os06g48720
Os.54979.1.S1_at--955--10031Chr06:29477184..29477208 (25 bp)
TAGATGAACAATTCTGCTTCTTTTC
LOC_Os06g48720
Os.54979.1.S1_at--1097--9551Chr06:29477166..29477190 (25 bp)
TCTTTTCCTCCATGTGGCGATGTCA
LOC_Os06g48720
Os.54979.1.S1_at--514--8371Chr06:29477151..29477175 (25 bp)
GGCGATGTCACCTCAGATAGGGCAT
LOC_Os06g48720
Os.54979.1.S1_at--110--6491Chr06:29477136..29477160 (25 bp)
GATAGGGCATCAGATTCCTTTTAGA
LOC_Os06g48720
Os.54979.1.S1_at--1046--3671Chr06:29477063..29477087 (25 bp)
CTTTCTAGACTAATATCGTGGCATT
LOC_Os06g48720
Os.54979.1.S1_at--1146--6031Chr06:29477038..29477062 (25 bp)
GAGATAGCTCTATTGTGATATGCAT
LOC_Os06g48720
Target Sequence 
GATACCTGTTCTACCAGTGTGACAATGGGTTGTGAAAAAAAAAGAGACAAAAGCAAGTTTCTTCACGAGGACCAATATGG
TGGGTGATTAGTGGGAGAGCAGAAGCAGAAATCCATCTCTCAAAAGTTTATGTCTCACTTGCATAAACTTTTGCTTTCTT
TTCTTTTCTAGAGGGTCCCTCACTTTCCATCACATCAAAAGGATATGTTGCTGTGATGCTAATATACGTGCTAGATGAAC
AATTCTGCTTCTTTTCCTCCATGTGGCGATGTCACCTCAGATAGGGCATCAGATTCCTTTTAGAACAAGCAACATATTTC
TTATCAAGAAGCTACACATATTTCGAATAATTCTTTCTAGACTAATATCGTGGCATTGAGATAGCTCTATTGTGATATGC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54979.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis