Browse Element(s) Details


Os.7468.1.S1_at

Description gb:AK104088.1
DB_XREF= gi:32989297
TID=Os.7468.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7468 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-030-D06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-030-D06, full insert sequence.
FL= gb:AK072266.1 gb:AK104088.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4870011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48650Os.48707.1.S1_at11/116+29433392..29440101subtilase family protein, putative, expressed
LOC_Os06g48660Os.49963.1.S1_at11/116+29440621..29443244pentatricopeptide, putative, expressed
LOC_Os06g48680Os.53779.1.S1_x_at11/116+29445626..29446537expressed protein
LOC_Os06g48690OsAffx.15990.1.S1_at11/116+29459033..29459946hypothetical protein
LOC_Os06g48700Os.7468.1.S1_at11/116+29461290..29466298expressed protein
LOC_Os06g48710Os.20602.2.S1_x_at9/116+29467259..29469439hAT family dimerisation domain containing protein
LOC_Os06g48720Os.54979.1.S1_at11/116+29476951..29479907Cadmium/zinc-transporting ATPase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7468.1.S1_at--886--8231Chr06:29462336..29462360 (25 bp)
GGCATCCTAAAGCTTACAGGGCTGT
LOC_Os06g48700
Os.7468.1.S1_at--1137--1071Chr06:29462319..29462343 (25 bp)
AGGGCTGTTGACACAAGCTTTGAAC
LOC_Os06g48700
Os.7468.1.S1_at--1136--5331Chr06:29461811..29461835 (25 bp)
GAAGAGGCCTTGCTACCTATTTGCA
LOC_Os06g48700
Os.7468.1.S1_at--719--191Chr06:29461793..29461817 (25 bp)
ATTTGCACGGAAATTCTATCCCGAG
LOC_Os06g48700
Os.7468.1.S1_at--68--6211Chr06:29461771..29461795 (25 bp)
GAGGCACTCGACAATCTGATGAACA
LOC_Os06g48700
Os.7468.1.S1_at--448--5991Chr06:29461648..29461672 (25 bp)
GAGACTCGCTGAATTGTTTTTTGTG
LOC_Os06g48700
Os.7468.1.S1_at--91--2991Chr06:29461605..29461629 (25 bp)
AATGATTTTCCTTTTTCGCGAAGAT
LOC_Os06g48700
Os.7468.1.S1_at--699--3331Chr06:29461538..29461562 (25 bp)
CACTGCGCTGTTCTGAGCAAATGAT
LOC_Os06g48700
Os.7468.1.S1_at--591--5212Chr06:29461498..29461519 (22 bp)
GAATTCGTAGTCATCCATCTGCATA
LOC_Os06g48700
Os.7468.1.S1_at--420--812Chr06:29461470..29461494 (25 bp)
ATGGGTGCAGCTACCTGATCAGTTT
LOC_Os06g48700
Os.7468.1.S1_at--68--6452Chr06:29461454..29461478 (25 bp)
GATCAGTTTGCCTGTAACGCTGCAG
LOC_Os06g48700
Target Sequence 
GGCATCCTAAAGCTTACAGGGCTGTTGACACAAGCTTTGAACTGCTTAAGAATATTTCGTCCATTGATGAGAGTATTCAT
GTTACAAGCAATGCAAAGCACCAAGTGATGAGAAGACCGTGCCTATGGAATGGCATGAAGAGGCCTTGCTACCTATTTGC
ACGGAAATTCTATCCCGAGGCACTCGACAATCTGATGAACATTTTCTCAAACTTCACTATCATCTAAGGGAAGGATGAAT
CAAAAACCTAGTTTGCATGTAACACTACAGTATAGGCCTTGGAAAATCAGAAACCCAGAGAGACTCGCTGAATTGTTTTT
TGTGATCTCTCTTGGAACATCAAATGATTTTCCTTTTTCGCGAAGATGTTGCATGGTTTGCAGTTGAAAGAGCAGTCAAA
TTTGTTCCNCACTGCGCTGTTCTGAGCAAATGATGTGTTGTTCATAATGAATTCGTAGTCATCCATCTGCATATTCATGG
GTGCAGCTACCTGATCAGTTTGCCTGTAACGCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7468.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis