Browse Element(s) Details


Os.53779.1.S1_x_at

Description gb:AK099967.1
DB_XREF= gi:32985176
TID=Os.53779.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53779 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127D12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127D12, full insert sequence.
FL= gb:AK099967.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4868011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48630OsAffx.15988.1.S1_at11/116+29418864..29421853ANTH domain containing protein
LOC_Os06g48640Os.12327.2.S1_at11/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48640Os.12327.1.S1_x_at2/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48650Os.48707.1.S1_at11/116+29433392..29440101subtilase family protein, putative, expressed
LOC_Os06g48660Os.49963.1.S1_at11/116+29440621..29443244pentatricopeptide, putative, expressed
LOC_Os06g48680Os.53779.1.S1_x_at11/116+29445626..29446537expressed protein
LOC_Os06g48690OsAffx.15990.1.S1_at11/116+29459033..29459946hypothetical protein
LOC_Os06g48700Os.7468.1.S1_at11/116+29461290..29466298expressed protein
LOC_Os06g48710Os.20602.2.S1_x_at9/116+29467259..29469439hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53779.1.S1_x_at--263--4031Chr06:29446217..29446241 (25 bp)
CGTTCAGGGCGGACGACCCACTGGA
LOC_Os06g48680
Os.53779.1.S1_x_at--300--1871Chr06:29446205..29446229 (25 bp)
ACGACCCACTGGAGGCCGGCACGGT
LOC_Os06g48680
Os.53779.1.S1_x_at--450--9271Chr06:29445966..29445990 (25 bp)
TCGCCGGAACGGTGCTACCTCGCGG
LOC_Os06g48680
Os.53779.1.S1_x_at--947--5411Chr06:29445919..29445943 (25 bp)
GAAGCCGCGGCTGGATCGCATCGAC
LOC_Os06g48680
Os.53779.1.S1_x_at--256--8571Chr06:29445908..29445932 (25 bp)
TGGATCGCATCGACGAGTCCTTCGG
LOC_Os06g48680
Os.53779.1.S1_x_at--248--511Chr06:29445900..29445924 (25 bp)
ATCGACGAGTCCTTCGGCCGCGCAT
LOC_Os06g48680
Os.53779.1.S1_x_at--792--10611Chr06:29445888..29445912 (25 bp)
TTCGGCCGCGCATCCATGCGGAGCT
LOC_Os06g48680
Os.53779.1.S1_x_at--814--3391Chr06:29445853..29445877 (25 bp)
CAGCACCGAGGCCTGAACATTTTTT
LOC_Os06g48680
Os.53779.1.S1_x_at--499--10551Chr06:29445786..29445810 (25 bp)
TTCTTGTTACTTTTCTTAGTAGTAG
LOC_Os06g48680
Os.53779.1.S1_x_at--133--10451Chr06:29445706..29445730 (25 bp)
TTAGTTTTCTGTTGTTTGTATATCC
LOC_Os06g48680
Os.53779.1.S1_x_at--28--2991Chr06:29445654..29445678 (25 bp)
AATGTTGGTTTGGATTGGATTCGGA
LOC_Os06g48680
Target Sequence 
CGTTCAGGGCGGACGACCCACTGGAGGCCGGCACGGTGTACTTCCTCCTCCCGCAGTCCATCTTCCAGTCCGAGTCCTCC
GCCGTCGACCTCGCCTGCCTCATGAACCGCCTCACCTCCCTCGCCCGCAAGGGCGCCGCCGCCGCCTCCAGCCCCGTCGA
GGCCCTCTTCACCGCCGGAATTCACCACCCGCCGCAGCCCTCCTCCTCCTGCAGCAGCTCCAAGCCGGCGGCGGCGGCGG
CGAGCTCGGGGTCGCCGGAACGGTGCTACCTCGCGGCGGCGGCGCGGCCGGCGGCGTGGAAGCCGCGGCTGGATCGCATC
GACGAGTCCTTCGGCCGCGCATCCATGCGGAGCTCCTCCGCTCGCAGCACCGAGGCCTGAACATTTTTTTTCTTCCTCTT
TTTTAATCTTTTTTCTCTTTATTATTTTATTTTCTTGTTACTTTTCTTAGTAGTAGTAGTAGTAGTAGTAGTAGAAGATG
ATAATTTCTGGATTTTTTTTTCTTTACAAAGTTAGTTTTCTGTTGTTTGTATATCCAAAAGGTGTAAATATAATCTAATT
TGTAATGTTGGTTTGGATTGGATTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53779.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis