Browse Element(s) Details


OsAffx.15988.1.S1_at

Description tigr:9634.m04733
TID=OsAffx.15988.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ENTH domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4863011/11ANTH domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48580Os.27639.1.S1_x_at8/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48580OsAffx.8980.1.S1_at6/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48590Os.4602.2.S1_a_at11/116+29397249..29401633Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os06g48600Os.5544.1.S1_at10/116+29401752..29402743Macrophage migration inhibitory factor family protein, expressed
LOC_Os06g48610Os.24092.1.S1_at11/116+29406746..29410788CCT motif family protein, expressed
LOC_Os06g48620Os.15339.1.S1_at11/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48620OsAffx.28174.1.S1_x_at7/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48630OsAffx.15988.1.S1_at11/116+29418864..29421853ANTH domain containing protein
LOC_Os06g48640Os.12327.2.S1_at11/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48640Os.12327.1.S1_x_at2/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48650Os.48707.1.S1_at11/116+29433392..29440101subtilase family protein, putative, expressed
LOC_Os06g48660Os.49963.1.S1_at11/116+29440621..29443244pentatricopeptide, putative, expressed
LOC_Os06g48680Os.53779.1.S1_x_at11/116+29445626..29446537expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005488molecular_functionbinding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15988.1.S1_at--1098--2611Chr06:29421001..29421025 (25 bp)
AACCTACCACAACCGCTGATTTATT
LOC_Os06g48630
OsAffx.15988.1.S1_at--905--9831Chr06:29421119..29421143 (25 bp)
TAAATGAAGTGAACCCTGCTGCCGC
LOC_Os06g48630
OsAffx.15988.1.S1_at--383--3831Chr06:29421137..29421161 (25 bp)
CTGCCGCCCAGCTTGAAGAGAACAA
LOC_Os06g48630
OsAffx.15988.1.S1_at--631--5971Chr06:29421154..29421178 (25 bp)
GAGAACAATGCACTGGCTCTGGCCA
LOC_Os06g48630
OsAffx.15988.1.S1_at--704--8451Chr06:29421173..29421303 (25 bp)
TGGCCATTGTATCACCAGGTAGCAA
LOC_Os06g48630
OsAffx.15988.1.S1_at--297--3651Chr06:29421328..29421352 (25 bp)
CTTCGGTGGCATGCTTGGATCGTCA
LOC_Os06g48630
OsAffx.15988.1.S1_at--708--7631Chr06:29421357..29421381 (25 bp)
GGGAGCTAGCGTTGGTCACTGAACC
LOC_Os06g48630
OsAffx.15988.1.S1_at--750--551Chr06:29421630..29421654 (25 bp)
ATCCGTTCGCCATGTCGACAAGTGT
LOC_Os06g48630
OsAffx.15988.1.S1_at--520--2151Chr06:29421748..29421772 (25 bp)
ACAGCAATTCTCAGGGTGGCCTCAG
LOC_Os06g48630
OsAffx.15988.1.S1_at--846--4451Chr06:29421766..29421790 (25 bp)
GCCTCAGTATGCTGGTGTTTCTCAG
LOC_Os06g48630
OsAffx.15988.1.S1_at--119--10551Chr06:29421784..29421808 (25 bp)
TTCTCAGGCGAATCCTTTCGGTGAT
LOC_Os06g48630
Target Sequence 
AACCTACCACAACCGCTGATTTATTGGGTTTAAATGAAGTGAACCCTGCTGCCGCCCAGCTTGAAGAGAACAATGCACTG
GCTCTGGCCATTGTATCACCAGGTAGCAACACATCTGCTGGTGCAGGCAGTGGCTTCGGTGGCATGCTTGGATCGTCAGG
TTGGGAGCTAGCGTTGGTCACTGAACCCACCAACAGCAGCAGCAACCAACTACTGACAGAGAGCAAGCTGGCTGGAGGGT
TCGACAAGCTGCTGCTTGATAGCTTATACGATGATGCATCAAGGAGGCAGCAAGGAGCCCAGATGGATCATCCTCGGGAT
CCGTTCGCCATGTCGACAAGTGTCGCGCCACCGACCAACGTGCAGATGTCGATGATGGCACAGCAGCAGCAATATTTCCA
GCAGGAGCAGCAGCAGCAAATGGTGTTAGGGATGCCACAGCAATTCTCAGGGTGGCCTCAGTATGCTGGTGTTTCTCAGG
CGAATCCTTTCGGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis