Browse Element(s) Details


Os.12327.1.S1_x_at

Description gb:AK071400.1
DB_XREF= gi:32981423
TID=Os.12327.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsRPN1b mRNA for 26S proteasome regulatory particle non-ATPase subunit1b, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092J12, full insert sequence.
FL= gb:AK071400.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1575011/11Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g486402/11Proteasome/cyclosome repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15730OsAffx.6287.1.S1_at11/119+9608001..9608858hypothetical protein
LOC_Os09g15740NANA9+9618674..9619153hypothetical protein
LOC_Os09g15750Os.12327.1.S1_x_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15750Os.12327.1.S1_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15760Os.10457.1.S1_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15760OsAffx.17722.1.S1_s_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15770Os.8401.1.S1_a_at11/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15770Os.8401.1.S1_at8/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15780OsAffx.29861.1.S1_at11/119+9637865..9641416expressed protein
LOC_Os09g15790Os.53227.1.S1_at11/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15790Os.57489.1.S1_x_at1/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15800OsAffx.29862.1.S1_at11/119+9646716..9649346pentatricopeptide, putative
LOC_Os09g15810Os.7067.1.S1_at11/119+9651208..9653971Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12327.1.S1_x_at--1022--7211Chr09:9627040..9627064 (25 bp)
GTCGACCCAAGACAATTACTGGATT
LOC_Os09g15750
Os.12327.1.S1_x_at--747--1931Chr09:9627057..9627081 (25 bp)
ACTGGATTCCAGACGCATTCAACGC
LOC_Os09g15750
Os.12327.1.S1_x_at--175--131Chr09:9627073..9627097 (25 bp)
ATTCAACGCCTGTATTACTTGCCGC
LOC_Os09g15750
Os.12327.1.S1_x_at--382--5451Chr09:9627102..9627126 (25 bp)
GAACGAGCAGAGCTGGCAACTGAAA
LOC_Os09g15750
Os.12327.1.S1_x_at--226--5532Chr09:9627123..9627226 (25 bp)
GAAAAATATCTTCCACTGACACCAG
LOC_Os09g15750
Os.12327.1.S1_x_at--862--3332Chr09:9627215..9627239 (25 bp)
CACTGACACCAGTTCTTGAGGGTTT
LOC_Os09g15750
Os.12327.1.S1_x_at--59--7411Chr09:9627241..9627265 (25 bp)
GTGATCCTAAGAAATAACCCAGAGT
LOC_Os09g15750
Os.12327.1.S1_x_at--63--2891Chr09:9627278..9627302 (25 bp)
AAGGGATAGATATGGCACACGCAAA
LOC_Os09g15750
Os.12327.1.S1_x_at--263--2031Chr09:9627294..9627318 (25 bp)
ACACGCAAAATGCAGGAAGGGCCTG
LOC_Os09g15750
Os.12327.1.S1_x_at--653--9591Chr09:9627643..9627667 (25 bp)
TCATTTGTTACAGTGGCTCGCACTC
LOC_Os09g15750
Os.12327.1.S1_x_at--1010--7531Chr09:9627655..9627679 (25 bp)
GTGGCTCGCACTCTAGCAGCAGAAA
LOC_Os09g15750
Target Sequence 
GTCGACCCAAGACAATTACTGGATTCCAGACGCATTCAACGCCTGTATTACTTGCCGCAGGGGAACGAGCAGAGCTGGCA
ACTGAAAAATATCTTCCACTGACACCAGTTCTTGAGGGTTTTGTGATCCTAAGAAATAACCCAGAGTATCATGAAGATTA
AGGGATAGATATGGCACACGCAAAATGCAGGAAGGGCCTGGAGTATTAGGAAGAGGCTTGGATCAATATCTAATTGTCAC
ACAAAGCAANTGANCAAATAGCACGATGAAGACAATGCATACTTGATACGGTGAGGACTGAGTTGTAACAAAGAGTTCAG
GTATAATGGGGCCAATATGACAGGAGAACTTTGTAAGAATTAGGAATAGAATCTGTGGGTGTAATGGCATGGCCGAAAAT
GTTTTTGACTATACCAGAATGAAAATGACCCAAGAGTTTGTTGCCACGTCCATGTATATGCAGCCCNTACTACTCGGTTG
TCTGATGTTTCCTTTTTTTTTGAATTGATCGTTTTTTGTTTGGGTCATTTGTTACAGTGGCTCGCACTCTAGCAGCAGAA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12327.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis