Browse Element(s) Details


Os.10457.1.S1_at

Description gb:AU095487
DB_XREF= gi:8858169
DB_XREF=AU095487
CLONE=R2722
TID=Os.10457.1
CNT=12
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.10457 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_565877.1 (A.thaliana) Expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1576011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15730OsAffx.6287.1.S1_at11/119+9608001..9608858hypothetical protein
LOC_Os09g15740NANA9+9618674..9619153hypothetical protein
LOC_Os09g15750Os.12327.1.S1_x_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15750Os.12327.1.S1_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15760Os.10457.1.S1_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15760OsAffx.17722.1.S1_s_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15770Os.8401.1.S1_a_at11/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15770Os.8401.1.S1_at8/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15780OsAffx.29861.1.S1_at11/119+9637865..9641416expressed protein
LOC_Os09g15790Os.53227.1.S1_at11/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15790Os.57489.1.S1_x_at1/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15800OsAffx.29862.1.S1_at11/119+9646716..9649346pentatricopeptide, putative
LOC_Os09g15810Os.7067.1.S1_at11/119+9651208..9653971Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD-binding domain containing protein, expressed
LOC_Os09g15820Os.9769.1.S1_at11/119+9654423..9658103Aldose 1-epimerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10457.1.S1_at--2--2811Chr09:9630517..9630541 (25 bp)
AAGTTGGTATCTGGCTGAGACTGCA
LOC_Os09g15760
Os.10457.1.S1_at--415--8911Chr09:9630532..9630556 (25 bp)
TGAGACTGCAGGTTTCAGTTCTGGG
LOC_Os09g15760
Os.10457.1.S1_at--929--9671Chr09:9630596..9630620 (25 bp)
TCACAGTAAAGATTGCTGCAGTTAT
LOC_Os09g15760
Os.10457.1.S1_at--980--211Chr09:9630625..9630649 (25 bp)
ATTTGTCTCTAATGTATGCTGTTAC
LOC_Os09g15760
Os.10457.1.S1_at--1112--91Chr09:9630665..9630689 (25 bp)
ATTCTGAGCCGCAAACTGTTTCTTT
LOC_Os09g15760
Os.10457.1.S1_at--310--6831Chr09:9630682..9630706 (25 bp)
GTTTCTTTGGCACATAAACCATGAG
LOC_Os09g15760
Os.10457.1.S1_at--883--4331Chr09:9630700..9630724 (25 bp)
CCATGAGAGTATGTGGTCTGGCGAT
LOC_Os09g15760
Os.10457.1.S1_at--253--6271Chr09:9630722..9630746 (25 bp)
GATGTGTTGTGAGGGCTCCTTTTCC
LOC_Os09g15760
Os.10457.1.S1_at--595--3812Chr09:9630737..9630761 (25 bp)
CTCCTTTTCCTTATTTCTGTTCTGA
LOC_Os09g15760
Os.10457.1.S1_at--88--3091Chr09:9630765..9630789 (25 bp)
AATCACACATTTGTTTGCTTGTTGG
LOC_Os09g15760
Os.10457.1.S1_at--517--9071Chr09:9630780..9630804 (25 bp)
TGCTTGTTGGTGTGTGTTATGCTCA
LOC_Os09g15760
Target Sequence 
AAGTTGGTATCTGGCTGAGACTGCAGGTTTCAGTTCTGGGGTTTGATTTAATTTCTGTTACAGCGTAATGTAAAAGTAAT
CACAGTAAAGATTGCTGCAGTTATGTTAATTTGTCTCTAATGTATGCTGTTACTGTTCTAGTAAATTAATTCTGAGCCGC
AAACTGTTTCTTTGGCACATAAACCATGAGAGTATGTGGTCTGGCGATGTGTTGTGAGGGCTCCTTTTCCTTATTTCTGT
TCTGAATCAATCACACATTTGTTTGCTTGTTGGTGTGTGTTATGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10457.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis