Browse Element(s) Details


OsAffx.17722.1.S1_s_at

Description tigr:9637.m01309
TID=OsAffx.17722.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1576011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15730OsAffx.6287.1.S1_at11/119+9608001..9608858hypothetical protein
LOC_Os09g15740NANA9+9618674..9619153hypothetical protein
LOC_Os09g15750Os.12327.1.S1_x_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15750Os.12327.1.S1_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15760Os.10457.1.S1_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15760OsAffx.17722.1.S1_s_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15770Os.8401.1.S1_a_at11/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15770Os.8401.1.S1_at8/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15780OsAffx.29861.1.S1_at11/119+9637865..9641416expressed protein
LOC_Os09g15790Os.53227.1.S1_at11/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15790Os.57489.1.S1_x_at1/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15800OsAffx.29862.1.S1_at11/119+9646716..9649346pentatricopeptide, putative
LOC_Os09g15810Os.7067.1.S1_at11/119+9651208..9653971Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD-binding domain containing protein, expressed
LOC_Os09g15820Os.9769.1.S1_at11/119+9654423..9658103Aldose 1-epimerase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17722.1.S1_s_at--56--10731Chr09:9630328..9630352 (25 bp)
TTGCTTCTCGCAAATGCATTAGCGA
LOC_Os09g15760
OsAffx.17722.1.S1_s_at--562--4911Chr09:9630330..9630354 (25 bp)
GCTTCTCGCAAATGCATTAGCGATA
LOC_Os09g15760
OsAffx.17722.1.S1_s_at--1080--9472Chr09:9630404..9630428 (25 bp)
TCTCAGGAAATGGACAAACCAAGTC
LOC_Os09g15760
OsAffx.17722.1.S1_s_at--119--5571Chr09:9630410..9630434 (25 bp)
GAAATGGACAAACCAAGTCACTGAA
LOC_Os09g15760
OsAffx.17722.1.S1_s_at--1105--7671Chr09:9630806..9630830 (25 bp)
GGGTTATCTGACATTCAGATTTTCA
LOC_Os09g15760
OsAffx.17722.1.S1_s_at--58--5691Chr09:9630815..9630839 (25 bp)
GACATTCAGATTTTCAGCCTTCAGG
LOC_Os09g15760
OsAffx.17722.1.S1_s_at--866--2071Chr09:9630816..9630840 (25 bp)
ACATTCAGATTTTCAGCCTTCAGGT
LOC_Os09g15760
OsAffx.17722.1.S1_s_at--622--10511Chr09:9630827..9630851 (25 bp)
TTCAGCCTTCAGGTGCCGTTTTTAA
LOC_Os09g15760
OsAffx.17722.1.S1_s_at--584--3371Chr09:9630829..9630853 (25 bp)
CAGCCTTCAGGTGCCGTTTTTAATG
LOC_Os09g15760
OsAffx.17722.1.S1_s_at--83--10431Chr09:9630834..9630858 (25 bp)
TTCAGGTGCCGTTTTTAATGGAAAT
LOC_Os09g15760
OsAffx.17722.1.S1_s_at--204--3471Chr09:9630836..9630860 (25 bp)
CAGGTGCCGTTTTTAATGGAAATAT
LOC_Os09g15760
Target Sequence 
TTGCTTCTCGCAAATGCATTAGCGATACTAAATGAAGACCGCTTTCTTGGCCCCAGAGGATGGAGCATGTCTGAAGTCTC
AGGAAATGGACAAACCAAGTCACTGAAGGGTCAGATTGTAGGGCTCATCTATGCCACACAGTTCTTGAGGATGCCGTTGA
TAGCGCTTAATGTTCTTATCATTGTTGTGAAGTTGGGGTTATCTGACATTCAGATTTTCAGCCTTCAGGTGCCGTTTTTA
ATGGAAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17722.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis