Browse Element(s) Details


Os.53227.1.S1_at

Description gb:AK071461.1
DB_XREF= gi:32981484
TID=Os.53227.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023092H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023092H24, full insert sequence.
FL= gb:AK071461.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1579011/11Ras-related protein Rab11B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15740NANA9+9618674..9619153hypothetical protein
LOC_Os09g15750Os.12327.1.S1_x_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15750Os.12327.1.S1_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15760Os.10457.1.S1_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15760OsAffx.17722.1.S1_s_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15770Os.8401.1.S1_a_at11/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15770Os.8401.1.S1_at8/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15780OsAffx.29861.1.S1_at11/119+9637865..9641416expressed protein
LOC_Os09g15790Os.53227.1.S1_at11/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15790Os.57489.1.S1_x_at1/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15800OsAffx.29862.1.S1_at11/119+9646716..9649346pentatricopeptide, putative
LOC_Os09g15810Os.7067.1.S1_at11/119+9651208..9653971Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD-binding domain containing protein, expressed
LOC_Os09g15820Os.9769.1.S1_at11/119+9654423..9658103Aldose 1-epimerase family protein, expressed
LOC_Os09g15830OsAffx.29863.1.S1_at10/119+9660772..9661911hypothetical protein
LOC_Os09g15840Os.57109.1.S1_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_x_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_at10/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840OsAffx.17950.1.S1_at8/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.24761.1.A1_at3/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.5.S1_x_at1/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53227.1.S1_at--500--2851Chr09:9643127..9643151 (25 bp)
AAGTGCCTTCACTGAGGTGCTAACT
LOC_Os09g15790
Os.53227.1.S1_at--622--7771Chr09:9643112..9643136 (25 bp)
GGTGCTAACTCAGATCTATCGCGTG
LOC_Os09g15790
Os.53227.1.S1_at--605--531Chr09:9643095..9643119 (25 bp)
ATCGCGTGGTCAGCAAGAAGGCCCT
LOC_Os09g15790
Os.53227.1.S1_at--68--6351Chr09:9642981..9643005 (25 bp)
GATGCTGTTCATCCTAAATCCATTA
LOC_Os09g15790
Os.53227.1.S1_at--567--8171Chr09:9642944..9642968 (25 bp)
GGAACCATATGCTCACCTGATTATA
LOC_Os09g15790
Os.53227.1.S1_at--477--7951Chr09:9642903..9642927 (25 bp)
GGATAACTTTCTTTTGCTGCCTAAC
LOC_Os09g15790
Os.53227.1.S1_at--1037--4291Chr09:9642884..9642908 (25 bp)
CCTAACCTGGTTGCCTGTGAGATTT
LOC_Os09g15790
Os.53227.1.S1_at--507--7871Chr09:9642782..9642806 (25 bp)
GGTTTGCATTTGTGGTTTCTTCATT
LOC_Os09g15790
Os.53227.1.S1_at--356--8951Chr09:9642733..9642757 (25 bp)
TGACAGGATTTGAGATCCTCCCCAC
LOC_Os09g15790
Os.53227.1.S1_at--429--1751Chr09:9642710..9642734 (25 bp)
ACCTTTCACTGCATAACATATCCCA
LOC_Os09g15790
Os.53227.1.S1_at--385--10751Chr09:9642569..9642593 (25 bp)
TTGAACTTCTTACCAGCCTGTATAT
LOC_Os09g15790
Target Sequence 
AAGTGCCTTCACTGAGGTGCTAACTCAGATCTATCGCGTGGTCAGCAAGAAGGCCCTCGACATCGGCGATGACCCTGCTG
CTCCACCAAGAGGACAGACCATCAATGTTGGTGGCAAAGATGATGTTTCTGCTGTGAAAAAGTCTGGATGCTGTTCATCC
TAAATCCATTATGTCCATGAGAAGGAACCATATGCTCACCTGATTATATCATGAGTAATTAAAAGGATAACTTTCTTTTG
CTGCCTAACCTGGTTGCCTGTGAGATTTTAGTGTTACATCAAGAAGGTTGGGGCTGTTAAACCCAGGTTGGGAAAAAGCT
AACTTTGAAGTGTCAGTGGTTTTATGGTTTGCATTTGTGGTTTCTTCATTGGTGTACTATTGTTCCATGTAAATTGACAG
GATTTGAGATCCTCCCCACCTTTCACTGCATAACATATCCCAGTAAAATGTTGTTGTAATTGGATATCAGACTGTAGCTG
ATTGGCAGCAAGGGTTCTAATTAGAAGGGCTATTATATTCTGTAACTCCTACTCACAAATGTACAAAAGTTTGCATCCTT
GAACTTCTTACCAGCCTGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis