Browse Element(s) Details


Os.24761.1.A1_at

Description gb:CR288411
DB_XREF= gi:44674977
DB_XREF=CR288411
CLONE=y776b07p3
TID=Os.24761.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24761 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_564989.1 (A.thaliana) expressed protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g158403/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15780OsAffx.29861.1.S1_at11/119+9637865..9641416expressed protein
LOC_Os09g15790Os.53227.1.S1_at11/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15790Os.57489.1.S1_x_at1/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15800OsAffx.29862.1.S1_at11/119+9646716..9649346pentatricopeptide, putative
LOC_Os09g15810Os.7067.1.S1_at11/119+9651208..9653971Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD-binding domain containing protein, expressed
LOC_Os09g15820Os.9769.1.S1_at11/119+9654423..9658103Aldose 1-epimerase family protein, expressed
LOC_Os09g15830OsAffx.29863.1.S1_at10/119+9660772..9661911hypothetical protein
LOC_Os09g15840Os.57109.1.S1_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_x_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_at10/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840OsAffx.17950.1.S1_at8/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.24761.1.A1_at3/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.5.S1_x_at1/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15850OsAffx.6289.1.S1_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.1.A1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.2.S1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15860OsAffx.17723.1.S1_at11/119+9692656..9694069expressed protein
LOC_Os09g15870NANA9+9697514..9697813hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24761.1.A1_at--153--10511Chr09:9663006..9663030 (25 bp)
TTCAATTACCTTGGATCAGCTTATT
LOC_Os09g15840
Os.24761.1.A1_at--824--1531Chr09:9662989..9663013 (25 bp)
AGCTTATTGAACCTGCTATGGTACC
LOC_Os09g15840
Os.24761.1.A1_at--829--7931Chr09:9662935..9662959 (25 bp)
GGATTACCACGAGGACAACTGAGAT
LOC_Os09g15840
Os.24761.1.A1_at--416--2391Chr09:9662710..9662734 (25 bp)
AAACTAGGCATTTTCGCTTCTGGAC
NONE
Os.24761.1.A1_at--175--8131Chr09:9662689..9662713 (25 bp)
GGACAGGATGCATTTTAGGGCCAAT
NONE
Os.24761.1.A1_at--958--10071Chr09:9662674..9662698 (25 bp)
TAGGGCCAATTTACCTGTACTCCAA
NONE
Os.24761.1.A1_at--43--7011Chr09:9662658..9662682 (25 bp)
GTACTCCAATGGTAGGTGGTTTTCA
NONE
Os.24761.1.A1_at--1138--5691Chr09:9662567..9662591 (25 bp)
GACTAGTTTGTGGACTGTTTCACAC
NONE
Os.24761.1.A1_at--113--6831Chr09:9662551..9662575 (25 bp)
GTTTCACACGACTCTTTCGTACAGT
NONE
Os.24761.1.A1_at--952--7991Chr09:9662513..9662537 (25 bp)
GGATGTTCAGCTGTGTACAATTGAT
NONE
Os.24761.1.A1_at--836--6291Chr09:9662491..9662515 (25 bp)
GATGAGGTGAATAATTGCCCAGTTA
NONE
Target Sequence 
TTCAATTACCTTGGATCAGCTTATTGAACCTGCTATGGTACCNCCGCNTCCGTTTTCATGGTATCTGAGAGGGATTACCA
CGAGGACAACTGAGATGCTGGTCAATGATCTGATANCGGAAACTGCTCGNCTNCGAGGTTTGGCAAATAATGCTATTGAC
AAGCAANATGTTGAGGGAAAGTGTGATACTAGTAGAGATCATCTAACAGAAGAGTGCAATGATATTAAGGAAAGATGGCG
TCAGAGAAGNANAACAGGACGGCANTGGAAACTCCCNTTAGATTAACTGCTNCAAGGATAAACTAGGCATTTTCGCTTCT
GGACAGGATGCATTTTAGGGCCAATTTACCTGTACTCCAATGGTAGGTGGTTTTCATTGTAGAATTTGATGAATTGCAGG
GTATTCATATTGATATTTTGTAGATGGCTAATAACATCATGTGACTAGTTTGTGGACTGTTTCACACGACTCTTTCGTAC
AGTAATAATGTAAAATGGATGTTCAGCTGTGTACAATTGATGAGGTGAATAATTGCCCAGTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24761.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis