Browse Element(s) Details


Os.9769.1.S1_at

Description gb:AK068681.1
DB_XREF= gi:32978698
TID=Os.9769.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.9769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013160H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013160H24, full insert sequence.
FL= gb:AK068681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1582011/11Aldose 1-epimerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15760Os.10457.1.S1_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15760OsAffx.17722.1.S1_s_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15770Os.8401.1.S1_a_at11/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15770Os.8401.1.S1_at8/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15780OsAffx.29861.1.S1_at11/119+9637865..9641416expressed protein
LOC_Os09g15790Os.53227.1.S1_at11/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15790Os.57489.1.S1_x_at1/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15800OsAffx.29862.1.S1_at11/119+9646716..9649346pentatricopeptide, putative
LOC_Os09g15810Os.7067.1.S1_at11/119+9651208..9653971Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD-binding domain containing protein, expressed
LOC_Os09g15820Os.9769.1.S1_at11/119+9654423..9658103Aldose 1-epimerase family protein, expressed
LOC_Os09g15830OsAffx.29863.1.S1_at10/119+9660772..9661911hypothetical protein
LOC_Os09g15840Os.57109.1.S1_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_x_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_at10/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840OsAffx.17950.1.S1_at8/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.24761.1.A1_at3/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.5.S1_x_at1/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15850OsAffx.6289.1.S1_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.1.A1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.2.S1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006012biological_processgalactose metabolism
GO:0004034molecular_functionaldose 1-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9769.1.S1_at--414--6451Chr09:9655856..9655880 (25 bp)
GATAAGCCTTTTTCATTTAACTCGG
LOC_Os09g15820
Os.9769.1.S1_at--636--10371Chr09:9655847..9655871 (25 bp)
TTTTCATTTAACTCGGCACTCCACA
LOC_Os09g15820
Os.9769.1.S1_at--668--1991Chr09:9655745..9655854 (25 bp)
ACTCCACAGCTATTTCAGTGCTTCA
LOC_Os09g15820
Os.9769.1.S1_at--309--1131Chr09:9655729..9655750 (22 bp)
AGTGCTTCAATTTCTGGTGTTTCAG
LOC_Os09g15820
Os.9769.1.S1_at--460--2791Chr09:9655115..9655139 (25 bp)
AAGAGGTGACTTTTCCAGGATTTGT
LOC_Os09g15820
Os.9769.1.S1_at--131--7951Chr09:9655098..9655122 (25 bp)
GGATTTGTCGATTGCATTTACCTTG
LOC_Os09g15820
Os.9769.1.S1_at--498--171Chr09:9655083..9655107 (25 bp)
ATTTACCTTGGTGCACCGAGTGAGC
LOC_Os09g15820
Os.9769.1.S1_at--958--1111Chr09:9655065..9655089 (25 bp)
AGTGAGCTCACCCTGGACAATGGAT
LOC_Os09g15820
Os.9769.1.S1_at--449--6331Chr09:9654916..9654940 (25 bp)
GATGCAGTGCTGTGGAATCCTCACT
LOC_Os09g15820
Os.9769.1.S1_at--1111--3311Chr09:9654895..9654919 (25 bp)
CACTTGCAGATGGAGGCTTGTTACA
LOC_Os09g15820
Os.9769.1.S1_at--757--5571Chr09:9654561..9654585 (25 bp)
GAAATGCAAATGTCATAGCCCCTAA
LOC_Os09g15820
Target Sequence 
GATAAGCCTTTTTCATTTAACTCGGCACTCCACAGCTATTTCAGTGCTTCAATTTCTGGTGTTTCAGTGAAAGGTCTCAA
AGGTTGTAAGACCCTAAATAAGGATCCCGATCCCAAAAACCCTTTGGAGGGGAAAGAAGAGAGGGAAGAGGTGACTTTTC
CAGGATTTGTCGATTGCATTTACCTTGGTGCACCGAGTGAGCTCACCCTGGACAATGGATTGGGTGACAAAATTGTGATA
TCAAATGCGAATTGGTCAGATGCAGTGCTGTGGAATCCTCACTTGCAGATGGAGGCTTGTTACAAAGATTTTGTCTGTGT
TGAAAATGCAAAGATTGAAACATTACAACTGGGGCCGAACCAATCTTGGGTGGCAGAGCAGAAAATTGAACTGATATGAA
TTATGAAGCTAAACTGGGCAAAACAATAGAGTACAACAATTATGTTGCAAAAATGAACTTCTCTTTTTCTTTACATCATG
AAATGCAAATGTCATAGCCCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis