Browse Element(s) Details

Os.8401.1.S1_a_at

Description

gb:AK067685.1
DB_XREF= gi:32977703
TID=Os.8401.1
CNT=48
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116G06, full insert sequence.
FL= gb:AK098857.1 gb:AK067685.1 gb:AK058307.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os09g15770	11/11	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g48350	11/11	Eukaryotic translation initiation factor 5, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os09g15730	OsAffx.6287.1.S1_at	11/11	9	+	9608001..9608858	hypothetical protein
LOC_Os09g15740	NA	NA	9	+	9618674..9619153	hypothetical protein
LOC_Os09g15750	Os.12327.1.S1_x_at	11/11	9	+	9619375..9627718	Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15750	Os.12327.1.S1_at	11/11	9	+	9619375..9627718	Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15760	Os.10457.1.S1_at	11/11	9	+	9628853..9630895	hypothetical protein
LOC_Os09g15760	OsAffx.17722.1.S1_s_at	11/11	9	+	9628853..9630895	hypothetical protein
LOC_Os09g15770	Os.8401.1.S1_a_at	11/11	9	+	9633475..9637045	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15770	Os.8401.1.S1_at	8/11	9	+	9633475..9637045	Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15780	OsAffx.29861.1.S1_at	11/11	9	+	9637865..9641416	expressed protein
LOC_Os09g15790	Os.53227.1.S1_at	11/11	9	+	9642565..9645171	Ras-related protein Rab11B, putative, expressed
LOC_Os09g15790	Os.57489.1.S1_x_at	1/11	9	+	9642565..9645171	Ras-related protein Rab11B, putative, expressed
LOC_Os09g15800	OsAffx.29862.1.S1_at	11/11	9	+	9646716..9649346	pentatricopeptide, putative
LOC_Os09g15810	Os.7067.1.S1_at	11/11	9	+	9651208..9653971	Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD-binding domain containing protein, expressed
LOC_Os09g15820	Os.9769.1.S1_at	11/11	9	+	9654423..9658103	Aldose 1-epimerase family protein, expressed
LOC_Os09g15830	OsAffx.29863.1.S1_at	10/11	9	+	9660772..9661911	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006446	biological_process	regulation of translational initiation
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0003743	molecular_function	translation initiation factor activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.8401.1.S1_a_at--1142--631	2	Chr09:9636512..9636536 (25 bp)	GATGAAGCCTCCCAGATGGTCCTGC	LOC_Os09g15770
Os.8401.1.S1_a_at--226--899	2	Chr09:9636514..9636538 (25 bp)	TGAAGCCTCCCAGATGGTCCTGCTG	LOC_Os09g15770
Os.8401.1.S1_a_at--97--267	2	Chr09:9636516..9636540 (25 bp)	AAGCCTCCCAGATGGTCCTGCTGCA	LOC_Os09g15770
Os.8401.1.S1_a_at--902--385	2	Chr09:9636579..9636603 (25 bp)	CTGTGAAGGAGGTGCCGATTGTTCT	LOC_Os09g15770
Os.8401.1.S1_a_at--395--531	2	Chr09:9636583..9636607 (25 bp)	GAAGGAGGTGCCGATTGTTCTCAAG	LOC_Os09g15770
Os.8401.1.S1_a_at--93--803	2	Chr09:9636586..9636610 (25 bp)	GGAGGTGCCGATTGTTCTCAAGGCC	LOC_Os09g15770
Os.8401.1.S1_a_at--633--103	2	Chr09:9636588..9636612 (25 bp)	AGGTGCCGATTGTTCTCAAGGCCCT	LOC_Os09g15770
Os.8401.1.S1_a_at--415--917	2	Chr09:9636591..9636615 (25 bp)	TGCCGATTGTTCTCAAGGCCCTGTA	LOC_Os09g15770
Os.8401.1.S1_a_at--286--423	2	Chr09:9636593..9636617 (25 bp)	CCGATTGTTCTCAAGGCCCTGTATG	LOC_Os09g15770
Os.8401.1.S1_a_at--1111--659	2	Chr09:9636595..9636619 (25 bp)	GATTGTTCTCAAGGCCCTGTATGAT	LOC_Os09g15770
Os.8401.1.S1_a_at--554--109	2	Chr09:9636720..9636744 (25 bp)	AGTGGCTCCAGAGCGCGGATTCTGA	LOC_Os09g15770

Target Sequence

GATGAAGCCTCCCAGATGGTCCTGCTGCAAGCGCTGGTGGCCTTCGGCGCCAAGTCAAGCCCCGAAGCTGTGAAGGAGGT
GCCGATTGTTCTCAAGGCCCTGTATGATGGGGACGTCCTGGATGAAGAAGTGATAACTCAGTGGTATAATGAATCTGTTG
CTGGTGGCAAGGAGTCCCAGGTGGTGAAGAATGCCAAGCCGTTCGTGGAGTGGCTCCAGAGCGCGGATTCTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis