Browse Element(s) Details


Os.8401.1.S1_at

Description gb:AK067685.1
DB_XREF= gi:32977703
TID=Os.8401.1
CNT=48
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.8401 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000L01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013116G06, full insert sequence.
FL= gb:AK098857.1 gb:AK067685.1 gb:AK058307.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g157708/11Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os06g483501/11Eukaryotic translation initiation factor 5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15730OsAffx.6287.1.S1_at11/119+9608001..9608858hypothetical protein
LOC_Os09g15740NANA9+9618674..9619153hypothetical protein
LOC_Os09g15750Os.12327.1.S1_x_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15750Os.12327.1.S1_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15760Os.10457.1.S1_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15760OsAffx.17722.1.S1_s_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15770Os.8401.1.S1_a_at11/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15770Os.8401.1.S1_at8/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15780OsAffx.29861.1.S1_at11/119+9637865..9641416expressed protein
LOC_Os09g15790Os.53227.1.S1_at11/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15790Os.57489.1.S1_x_at1/119+9642565..9645171Ras-related protein Rab11B, putative, expressed
LOC_Os09g15800OsAffx.29862.1.S1_at11/119+9646716..9649346pentatricopeptide, putative
LOC_Os09g15810Os.7067.1.S1_at11/119+9651208..9653971Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD-binding domain containing protein, expressed
LOC_Os09g15820Os.9769.1.S1_at11/119+9654423..9658103Aldose 1-epimerase family protein, expressed
LOC_Os09g15830OsAffx.29863.1.S1_at10/119+9660772..9661911hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006446biological_processregulation of translational initiation
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8401.1.S1_at--1161--931Chr09:9636750..9636774 (25 bp)
AGGAAGAGTGATGCGCCGAATCTCC
LOC_Os09g15770
Os.8401.1.S1_at--204--4171Chr09:9636794..9636818 (25 bp)
CGCCTTATCGTCTTTTCAGTATTTC
LOC_Os09g15770
Os.8401.1.S1_at--150--10291Chr09:9636815..9636839 (25 bp)
TTTCGTTCGTCATGAGTATTTCCAG
LOC_Os09g15770
Os.8401.1.S1_at--118--6891Chr09:9636830..9636854 (25 bp)
GTATTTCCAGTTCGCGTCATGAGTG
LOC_Os09g15770
Os.8401.1.S1_at--737--9371Chr09:9636857..9636881 (25 bp)
TCGAGTTTGTTTGTGCTGTGCGCTT
LOC_Os09g15770
Os.8401.1.S1_at--460--1671Chr09:9636905..9636929 (25 bp)
AAATAAACCCAGAGTCCCAGACAGT
LOC_Os09g15770
Os.8401.1.S1_at--198--791Chr09:9636989..9637013 (25 bp)
ATGTGTTTCACGTGTCAATGGTTAA
LOC_Os09g15770
Os.8401.1.S1_at--556--10151Chr09:9637014..9637038 (25 bp)
TATCGGAGTCTCATGTTGGCTCTTG
LOC_Os09g15770
Os.8401.1.S1_at--120--4832Chr09:9637032..9637056 (25 bp)
GCTCTTGTGAGATTACTGGCTGCAT
NONE
Os.8401.1.S1_at--155--3851Chr09:9637051..9637075 (25 bp)
CTGCATCTGTTACTTGCTTGATATT
NONE
Os.8401.1.S1_at--876--231Chr09:9637086..9637110 (25 bp)
ATATATCTTGCGCTGTGTTCTTAGC
NONE
Target Sequence 
AGGAAGAGTGATGCGCCGAATCTCCTCCCAATCATCGCCTACTTCGCCTTATCGTCTTTTCAGTATTTCGTTCGTCATGA
GTATTTCCAGTTCGCGTCATGAGTGCTTCGAGTTTGTTTGTGCTGTGCGCTTTCTTATCTGTAATGTTGGTCAATAAATA
AACCCAGAGTCCCAGACAGTCCTCAGAGACTATGTGGTGTCACACTCCAGCTGGAGATCTTTTTATTTATCAAACCTTAA
TGTGTTTCACGTGTCAATGGTTAATATCGGAGTCTCATGTTGGCTCTTGTGAGATTACTGGCTGCATCTGTTACTTGCTT
GATATTATCTGTGTNAATATATCTTGCGCTGTGTTCTTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis