Browse Element(s) Details


OsAffx.6287.1.S1_at

Description tigr:9637.m01306
TID=OsAffx.6287.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1573011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15710NANA9+9588205..9590906hypothetical protein
LOC_Os09g15720OsAffx.29860.1.S1_at10/119+9592569..9594102hypothetical protein
LOC_Os09g15730OsAffx.6287.1.S1_at11/119+9608001..9608858hypothetical protein
LOC_Os09g15740NANA9+9618674..9619153hypothetical protein
LOC_Os09g15750Os.12327.1.S1_x_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15750Os.12327.1.S1_at11/119+9619375..9627718Proteasome/cyclosome repeat family protein, expressed
LOC_Os09g15760Os.10457.1.S1_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15760OsAffx.17722.1.S1_s_at11/119+9628853..9630895hypothetical protein
LOC_Os09g15770Os.8401.1.S1_a_at11/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed
LOC_Os09g15770Os.8401.1.S1_at8/119+9633475..9637045Eukaryotic translation initiation factor 5, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6287.1.S1_at--239--6231Chr09:9608031..9608055 (25 bp)
GAGGCCATGAATTCCATGAACGTGA
LOC_Os09g15730
OsAffx.6287.1.S1_at--850--3511Chr09:9608045..9608069 (25 bp)
CATGAACGTGAAGGCGACCGAGCAA
LOC_Os09g15730
OsAffx.6287.1.S1_at--1002--5031Chr09:9608094..9608118 (25 bp)
GCAGAGGCGAACACTGTAGTAGGCT
LOC_Os09g15730
OsAffx.6287.1.S1_at--941--5491Chr09:9608102..9608126 (25 bp)
GAACACTGTAGTAGGCTTGGATGCC
LOC_Os09g15730
OsAffx.6287.1.S1_at--809--10051Chr09:9608110..9608134 (25 bp)
TAGTAGGCTTGGATGCCGAGGTCTT
LOC_Os09g15730
OsAffx.6287.1.S1_at--1098--3251Chr09:9608152..9608176 (25 bp)
CAAAGGCCTTGGAGACAATGGCGGA
LOC_Os09g15730
OsAffx.6287.1.S1_at--997--6211Chr09:9608181..9608205 (25 bp)
GAGGCCTTGGATACAACAGTAGAGG
LOC_Os09g15730
OsAffx.6287.1.S1_at--710--6471Chr09:9608190..9608214 (25 bp)
GATACAACAGTAGAGGGCGACATGG
LOC_Os09g15730
OsAffx.6287.1.S1_at--176--6131Chr09:9608202..9608226 (25 bp)
GAGGGCGACATGGTGACCATCGTCT
LOC_Os09g15730
OsAffx.6287.1.S1_at--936--5651Chr09:9608208..9608232 (25 bp)
GACATGGTGACCATCGTCTCTCGCC
LOC_Os09g15730
OsAffx.6287.1.S1_at--980--7131Chr09:9608234..9608258 (25 bp)
GTCTGGCTACCCAAAGGCTACAACT
LOC_Os09g15730
Target Sequence 
GAGGCCATGAATTCCATGAACGTGAAGGCGACCGAGCAAGCGGTCGCCGAGGCCGGCGCGGAGGCAGAGGCGAACACTGT
AGTAGGCTTGGATGCCGAGGTCTTGGAGACGGTGGCGGAGGCAAAGGCCTTGGAGACAATGGCGGAGGCAGAGGCCTTGG
ATACAACAGTAGAGGGCGACATGGTGACCATCGTCTCTCGCCCGTCTGGCTACCCAAAGGCTACAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6287.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis