Browse Element(s) Details


OsAffx.29860.1.S1_at

Description tigr:9637.m01305
TID=OsAffx.29860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1572010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15670Os.9022.1.S1_at11/119+9566470..9567889Protein phosphatase 2C, putative, expressed
LOC_Os09g15680Os.32340.1.S1_at11/119+9569652..9570654hypothetical protein
LOC_Os09g15690NANA9+9572399..9572617hypothetical protein
LOC_Os09g15700Os.48036.1.A1_at11/119+9576709..9580076Leucine Rich Repeat family protein, expressed
LOC_Os09g15710NANA9+9588205..9590906hypothetical protein
LOC_Os09g15720OsAffx.29860.1.S1_at10/119+9592569..9594102hypothetical protein
LOC_Os09g15730OsAffx.6287.1.S1_at11/119+9608001..9608858hypothetical protein
LOC_Os09g15740NANA9+9618674..9619153hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29860.1.S1_at--1011--3331NONE
CACCTGTCGGCCTGAAATTTACCGG
NONE
OsAffx.29860.1.S1_at--19--5593Chr03:34599037..34599259 (25 bp)
GAAATTTACCGGCTTTTCACCAGAT
NONE
OsAffx.29860.1.S1_at--775--1772Chr12:5519402..5519422 (21 bp)
ACCGGCTTTTCACCAGATTTCATGA
NONE
OsAffx.29860.1.S1_at--880--651Chr09:9592706..9592730 (25 bp)
ATGAAAACCGTCATTTCACCAGAGC
LOC_Os09g15720
OsAffx.29860.1.S1_at--234--7131Chr09:9592697..9592721 (25 bp)
GTCATTTCACCAGAGCCCGAAACTG
LOC_Os09g15720
OsAffx.29860.1.S1_at--94--1371Chr09:9592686..9592710 (25 bp)
AGAGCCCGAAACTGAAGTTCATATT
LOC_Os09g15720
OsAffx.29860.1.S1_at--797--1211Chr09:9592671..9592695 (25 bp)
AGTTCATATTGGAATCGTAAACCCT
LOC_Os09g15720
OsAffx.29860.1.S1_at--850--5252Chr09:16035414..16035433 (20 bp)
GAATCGTAAACCCTGCTGCTCAGCT
NONE
OsAffx.29860.1.S1_at--274--7051Chr09:9592655..9592679 (25 bp)
GTAAACCCTGCTGCTCAGCTTCTTT
LOC_Os09g15720
OsAffx.29860.1.S1_at--736--591Chr09:9592626..9592650 (25 bp)
ATGCCTTTCTCGAATCTCAGACTCG
LOC_Os09g15720
OsAffx.29860.1.S1_at--499--5251Chr09:9592615..9592639 (25 bp)
GAATCTCAGACTCGACATGCCCCGT
LOC_Os09g15720
Target Sequence 
CACCTGTCGGCCTGAAATTTACCGGCTTTTCACCAGATTTCATGAAAACCGTCATTTCACCAGAGCCCGAAACTGAAGTT
CATATTGGAATCGTAAACCCTGCTGCTCAGCTTCTTTCTCCATGCCTTTCTCGAATCTCAGACTCGACATGCCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis