Browse Element(s) Details


Os.32340.1.S1_at

Description gb:AK105247.1
DB_XREF= gi:32990456
TID=Os.32340.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32340 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-113-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-113-H12, full insert sequence.
FL= gb:AK105247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1568011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15639Os.52634.2.S1_x_at11/119+9543293..9545477expressed protein
LOC_Os09g15639Os.36453.1.S1_at2/119+9543293..9545477expressed protein
LOC_Os09g15650NANA9+9549098..9550318hypothetical protein
LOC_Os09g15660OsAffx.17721.1.S1_at11/119+9553910..9555217hypothetical protein
LOC_Os09g15670Os.9022.1.S1_at11/119+9566470..9567889Protein phosphatase 2C, putative, expressed
LOC_Os09g15680Os.32340.1.S1_at11/119+9569652..9570654hypothetical protein
LOC_Os09g15690NANA9+9572399..9572617hypothetical protein
LOC_Os09g15700Os.48036.1.A1_at11/119+9576709..9580076Leucine Rich Repeat family protein, expressed
LOC_Os09g15710NANA9+9588205..9590906hypothetical protein
LOC_Os09g15720OsAffx.29860.1.S1_at10/119+9592569..9594102hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32340.1.S1_at--550--1851Chr09:9570124..9570148 (25 bp)
ACGAATGACGCCATCGTCGCGAGGA
LOC_Os09g15680
Os.32340.1.S1_at--840--1771Chr09:9570188..9570212 (25 bp)
ACCGGCGCATTGACCGCGAGCGTGA
LOC_Os09g15680
Os.32340.1.S1_at--301--4371Chr09:9570321..9570345 (25 bp)
CCACGGGTTGGCTTTGGCGTGATCA
LOC_Os09g15680
Os.32340.1.S1_at--927--4651Chr09:9570372..9570396 (25 bp)
GCGTGCTCTAGTCAGCGACGTCGAT
LOC_Os09g15680
Os.32340.1.S1_at--812--4051Chr09:9570393..9570417 (25 bp)
CGATGTTGATGTCGACGCGGCCCAC
LOC_Os09g15680
Os.32340.1.S1_at--48--5451Chr09:9570485..9570509 (25 bp)
GAACGGCCGAGTTTCACGTCGAGGA
LOC_Os09g15680
Os.32340.1.S1_at--680--10811Chr09:9570512..9570536 (25 bp)
TTGTGGCCGCCATAAGGTTGGCCGA
LOC_Os09g15680
Os.32340.1.S1_at--880--3831Chr09:9570560..9570584 (25 bp)
CTGCTGAGCAATGGCACGGCCGTGA
LOC_Os09g15680
Os.32340.1.S1_at--531--1951Chr09:9570575..9570599 (25 bp)
ACGGCCGTGACCTTGAAGTCGTGAT
LOC_Os09g15680
Os.32340.1.S1_at--436--5331Chr09:9570589..9570613 (25 bp)
GAAGTCGTGATGTTCTGCAACAAAA
LOC_Os09g15680
Os.32340.1.S1_at--914--171Chr09:9570625..9570649 (25 bp)
ATTTTTGTGGCTAAATCCTGCTCAA
LOC_Os09g15680
Target Sequence 
ACGAATGACGCCATCGTCGCGAGGATGGAGGCGGGGAAGAAGCGGGCGGTGGTGGAGGTGCTCCACCGGCGCATTGACCG
CGAGCGTGACGACCCGCGGCGGCTGCGGTCAGAGGTCGCACTGGAGCAGATGGTGCTCGTCCGGCACCAGGTCGCTCACG
CGCTGCAGTTGGCCGAGCGCGCCGTGGCGGCGGAGACCCACGGGTTGGCTTTGGCGTGATCAGCGGTCGCCACTACCGAG
CAGGCCGCGCGTGCTCTAGTCAGCGACGTCGATGTTGATGTCGACGCGGCCCACCACAATGTCGTGGCGGTCCCAACGCG
GAGGCCGGAGGAGTTGCGCGGGGGCGTGGAGGGCGAGGAGAGAACGGCCGAGTTTCACGTCGAGGAGATTGTGGCCGCCA
TAAGGTTGGCCGAGGCGCACGCCAGGAAGCAGGAAGCTGCTGAGCAATGGCACGGCCGTGACCTTGAAGTCGTGATGTTC
TGCAACAAAATTTGCATATTAATTTTTGTGGCTAAATCCTGCTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32340.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis