Browse Element(s) Details


OsAffx.17721.1.S1_at

Description tigr:9637.m01299
TID=OsAffx.17721.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1566011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15610Os.14491.2.S1_x_at4/119+9529692..9532617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15610Os.47463.1.S1_x_at4/119+9529692..9532617transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15620NANA9+9532863..9534256transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15630Os.27037.1.A1_at1/119+9535282..9538504transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g15639Os.52634.2.S1_x_at11/119+9543293..9545477expressed protein
LOC_Os09g15639Os.36453.1.S1_at2/119+9543293..9545477expressed protein
LOC_Os09g15650NANA9+9549098..9550318hypothetical protein
LOC_Os09g15660OsAffx.17721.1.S1_at11/119+9553910..9555217hypothetical protein
LOC_Os09g15670Os.9022.1.S1_at11/119+9566470..9567889Protein phosphatase 2C, putative, expressed
LOC_Os09g15680Os.32340.1.S1_at11/119+9569652..9570654hypothetical protein
LOC_Os09g15690NANA9+9572399..9572617hypothetical protein
LOC_Os09g15700Os.48036.1.A1_at11/119+9576709..9580076Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17721.1.S1_at--159--3551Chr09:9554433..9554457 (25 bp)
CATCGGGCGGCTTCTACTGGCGGAT
LOC_Os09g15660
OsAffx.17721.1.S1_at--647--4611Chr09:9554397..9554421 (25 bp)
GCGACCGCATGCTTGTTCATAGTTG
LOC_Os09g15660
OsAffx.17721.1.S1_at--89--10491Chr09:9554366..9554390 (25 bp)
TTACAGTTACAGCACGTTCTCGCGG
LOC_Os09g15660
OsAffx.17721.1.S1_at--1085--5751Chr09:9554254..9554278 (25 bp)
GACGTGCGCATTGCCTGGTTGATGA
LOC_Os09g15660
OsAffx.17721.1.S1_at--966--2171Chr09:9554157..9554181 (25 bp)
ACACGGCGCCGGAGAGCTTCATCAT
LOC_Os09g15660
OsAffx.17721.1.S1_at--478--5891Chr09:9554144..9554168 (25 bp)
GAGCTTCATCATCGCTGGTAATAAT
LOC_Os09g15660
OsAffx.17721.1.S1_at--760--9751Chr09:9554126..9554150 (25 bp)
TAATAATGCGGTGATCGCCGACGCC
LOC_Os09g15660
OsAffx.17721.1.S1_at--775--5351Chr09:9554015..9554039 (25 bp)
GAAGATCGATGAGCCCAAGCACCAC
LOC_Os09g15660
OsAffx.17721.1.S1_at--368--4351Chr09:9553994..9554018 (25 bp)
CCACGCCGGTGGTGTAGTGACGTAT
LOC_Os09g15660
OsAffx.17721.1.S1_at--790--1111Chr09:9553979..9554003 (25 bp)
AGTGACGTATCCGTACGAGCTGCCA
LOC_Os09g15660
OsAffx.17721.1.S1_at--235--5851Chr09:9553946..9553970 (25 bp)
GACCTTGAACGCGTGTTTCTTGAGC
LOC_Os09g15660
Target Sequence 
CATCGGGCGGCTTCTACTGGCGGATGGACGACGACGGCGACCGCATGCTTGTTCATAGTTGTTACACTTACAGTTACAGC
ACGTTCTCGCGGGTGGCGCTTCCGGAGGCGATGAAGGGCGCCCGGCGGCGCGACGACGGCACGTCGTCGGCGTTCCGGGT
CGTCGCCGGCGCCGACGGCGACGTGCGCATTGCCTGGTTGATGAGCGGCGTCCCCTCGGTCTTCGCCCGTCGCAGGGAGC
AGTGGTGGATGGAGAAGCGCCTCCAGCTACCGGCGCACACGGCGCCGGAGAGCTTCATCATCGCTGGTAATAATGCGGTG
ATCGCCGACGCCGGAGCAGGACGCGTCCTCCTGGCGCCGGCGGAGGTGGACAAGCGGCGGCGGCGGCGGCGGGTGATCTC
CATCGAGCTCGCCACCATGAAGATCGATGAGCCCAAGCACCACGCCGGTGGTGTAGTGACGTATCCGTACGAGCTGCCAT
GGCCGGTGACCTTGAACGCGTGTTTCTTGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis