Browse Element(s) Details


Os.48036.1.A1_at

Description gb:AK120843.1
DB_XREF= gi:37990466
TID=Os.48036.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.48036 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023022K03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022K03, full insert sequence.
FL= gb:AK120843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1570011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15660OsAffx.17721.1.S1_at11/119+9553910..9555217hypothetical protein
LOC_Os09g15670Os.9022.1.S1_at11/119+9566470..9567889Protein phosphatase 2C, putative, expressed
LOC_Os09g15680Os.32340.1.S1_at11/119+9569652..9570654hypothetical protein
LOC_Os09g15690NANA9+9572399..9572617hypothetical protein
LOC_Os09g15700Os.48036.1.A1_at11/119+9576709..9580076Leucine Rich Repeat family protein, expressed
LOC_Os09g15710NANA9+9588205..9590906hypothetical protein
LOC_Os09g15720OsAffx.29860.1.S1_at10/119+9592569..9594102hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48036.1.A1_at--809--9091Chr09:9577256..9577536 (25 bp)
TGCTCCTGAGTATGCCTACACTATA
LOC_Os09g15700
Os.48036.1.A1_at--103--7511Chr09:9577195..9577219 (25 bp)
GTGGTCATGCTGGAACTTGTTACTG
LOC_Os09g15700
Os.48036.1.A1_at--143--2791Chr09:9577168..9577192 (25 bp)
AAGAGTCCCATGTCATCCGATATTG
LOC_Os09g15700
Os.48036.1.A1_at--534--6951Chr09:9577041..9577065 (25 bp)
GTAGAGTTCTGAGGATTGCGCTGCT
LOC_Os09g15700
Os.48036.1.A1_at--651--9071Chr09:9577020..9577044 (25 bp)
TGCTCTGCGTTAAGAACCTCCCAAA
LOC_Os09g15700
Os.48036.1.A1_at--802--6191Chr09:9576980..9577004 (25 bp)
GAGGCTTGTGGTGAAGTTCTTGCTT
LOC_Os09g15700
Os.48036.1.A1_at--127--671Chr09:9576925..9576949 (25 bp)
ATGAAGATTACGGAGGCGCTCCCTG
LOC_Os09g15700
Os.48036.1.A1_at--895--7851Chr09:9576865..9576889 (25 bp)
GGTAGTATGTGCTCTTCTTGGACAA
LOC_Os09g15700
Os.48036.1.A1_at--878--9031Chr09:9576800..9576824 (25 bp)
TGCACCCCAGATAGCAGCTAGGTAT
LOC_Os09g15700
Os.48036.1.A1_at--1129--7851Chr09:9576780..9576804 (25 bp)
GGTATCTCTGAAACTTTAGCATTTT
LOC_Os09g15700
Os.48036.1.A1_at--953--211Chr09:9576734..9576758 (25 bp)
ATATTTAGTCGGGTTCAGCTCTGCA
LOC_Os09g15700
Target Sequence 
TGCTCCTGAGTATGCCTACACTATACGTGTAACTGAGAAGAGCGATGTATATAGCTTTGGTGTGGTCATGCTGGAACTTG
TTACTGGAAAGAGTCCCATGTCATCCGATATTGGTGACAAGGACCTGGTGGCATGGGCAGCCACCAATGTGGAGCAGAAT
GGGGCAGAGTCAGTGCTAGATGAGAAGATTGCTGAACATTTCAAGGATGAGATGTGTAGAGTTCTGAGGATTGCGCTGCT
CTGCGTTAAGAACCTCCCAAACAACCGCCCGTCGATGAGGCTTGTGGTGAAGTTCTTGCTTGACATCAAGGGAGAGAACA
AACCGAAGGCGATGAAGATTACGGAGGCGCTCCCTGCCACATGATTTCAGGCAACGGATGATACTACTAGCGGTAGTATG
TGCTCTTCTTGGACAATGTACTTGAAACCGTTGGAATTATATCCAGTCCTAAGAAGNTGCACCCCAGATAGCAGCTAGGT
ATCTCTGAAACTTTAGCATTTTGATAACCTAATAATGTTGGAAATATTTAGTCGGGTTCAGCTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48036.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis