Browse Element(s) Details


Os.5544.1.S1_at

Description gb:AK062047.1
DB_XREF= gi:32972065
TID=Os.5544.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5544 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-044-A11, full insert sequence.
FL= gb:AK120103.1 gb:AK062047.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4860010/11Macrophage migration inhibitory factor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48550OsAffx.15986.1.S1_at11/116+29376998..29377953hypothetical protein
LOC_Os06g48560OsAffx.15987.1.S1_at11/116+29380139..29381657Transferase family protein
LOC_Os06g48560OsAffx.20808.1.S1_x_at1/116+29380139..29381657Transferase family protein
LOC_Os06g48560OsAffx.15863.1.S1_at1/116+29380139..29381657Transferase family protein
LOC_Os06g48570Os.24710.1.A1_s_at11/116+29382239..29384809Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48570OsAffx.28173.1.S1_at11/116+29382239..29384809Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48580Os.27639.1.S1_x_at8/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48580OsAffx.8980.1.S1_at6/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48590Os.4602.2.S1_a_at11/116+29397249..29401633Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os06g48600Os.5544.1.S1_at10/116+29401752..29402743Macrophage migration inhibitory factor family protein, expressed
LOC_Os06g48610Os.24092.1.S1_at11/116+29406746..29410788CCT motif family protein, expressed
LOC_Os06g48620Os.15339.1.S1_at11/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48620OsAffx.28174.1.S1_x_at7/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48630OsAffx.15988.1.S1_at11/116+29418864..29421853ANTH domain containing protein
LOC_Os06g48640Os.12327.2.S1_at11/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48640Os.12327.1.S1_x_at2/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006954biological_processinflammatory response
GO:0009613biological_processresponse to pest, pathogen or parasite
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5544.1.S1_at--576--2671NONE
AAGCCCGAATCCTACGTCATGGTGT
NONE
Os.5544.1.S1_at--926--8371Chr06:29402292..29402316 (25 bp)
GGCGAGCTCATGTCCATTGGCGGCA
LOC_Os06g48600
Os.5544.1.S1_at--445--7091Chr06:29402256..29402280 (25 bp)
GTCAACGGAAAGCTGAGCGCCGCTC
LOC_Os06g48600
Os.5544.1.S1_at--440--7111Chr06:29402202..29402226 (25 bp)
GTCAGCAGGTCTAGGTTCTACGTCA
LOC_Os06g48600
Os.5544.1.S1_at--173--3211Chr06:29401931..29401955 (25 bp)
CAATGGGTCGACATTCTGAGGCCAA
LOC_Os06g48600
Os.5544.1.S1_at--1135--9451Chr06:29401917..29401941 (25 bp)
TCTGAGGCCAAGTCCGTCAAAAGTT
LOC_Os06g48600
Os.5544.1.S1_at--855--3271Chr06:29401900..29401924 (25 bp)
CAAAAGTTGGATTGCTGCGTCGAAT
LOC_Os06g48600
Os.5544.1.S1_at--1044--751Chr06:29401848..29401872 (25 bp)
ATGTCATGTGTATCATTCCGTTGCA
LOC_Os06g48600
Os.5544.1.S1_at--331--6671Chr06:29401829..29401853 (25 bp)
GTTGCACTTTCGACATCATCCATGA
LOC_Os06g48600
Os.5544.1.S1_at--149--791Chr06:29401791..29401815 (25 bp)
ATGTGAGAGACCGAACTTTGCCTGC
LOC_Os06g48600
Os.5544.1.S1_at--70--2051Chr06:29401777..29401801 (25 bp)
ACTTTGCCTGCTTTATTTCAATCAA
LOC_Os06g48600
Target Sequence 
AAGCCCGAATCCTACGTCATGGTGTCGATCAGCGGGNTCGGTGCCCATGTCGTTCGCCGCCAGCGAGGAGCCGGCGGCCT
ACGGCGAGCTCATGTCCATTGGCGGCATCGGCCCCGGCGTCAACGGAAAGCTGAGCGCCGCTCTCGCCGAGATCCTCGAG
ACCAAGCTCTCCGTCAGCAGGTCTAGGTTCTACGTCAAATTTGACGATGTCAAGGGATTCAATTTGGGGTTCAATGGGTC
GACATTCTGAGGCCAAGTCCGTCAAAAGTTGGATTGCTGCGTCGAATCAATAAAATTCTAAGGCTAAATGTTACATGTCA
TGTGTATCATTCCGTTGCACTTTCGACATCATCCATGAATGTGTTTCGTTTATGTGAGAGACCGAACTTTGCCTGCTTTA
TTTCAATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5544.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis