Browse Element(s) Details


Os.24710.1.A1_s_at

Description gb:CF299882
DB_XREF= gi:33671643
DB_XREF=7LEAF--04-B07.g1
CLONE=7LEAF--04-B07
TID=Os.24710.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24710 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200524.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4857011/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48530Os.38989.1.S1_at11/116+29356541..29363557C2H2 zinc-finger protein, putative, expressed
LOC_Os06g48540OsAffx.20823.2.S1_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48540OsAffx.20823.2.S1_x_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48550OsAffx.15986.1.S1_at11/116+29376998..29377953hypothetical protein
LOC_Os06g48560OsAffx.15987.1.S1_at11/116+29380139..29381657Transferase family protein
LOC_Os06g48560OsAffx.20808.1.S1_x_at1/116+29380139..29381657Transferase family protein
LOC_Os06g48560OsAffx.15863.1.S1_at1/116+29380139..29381657Transferase family protein
LOC_Os06g48570Os.24710.1.A1_s_at11/116+29382239..29384809Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48570OsAffx.28173.1.S1_at11/116+29382239..29384809Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48580Os.27639.1.S1_x_at8/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48580OsAffx.8980.1.S1_at6/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48590Os.4602.2.S1_a_at11/116+29397249..29401633Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os06g48600Os.5544.1.S1_at10/116+29401752..29402743Macrophage migration inhibitory factor family protein, expressed
LOC_Os06g48610Os.24092.1.S1_at11/116+29406746..29410788CCT motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24710.1.A1_s_at--81--3531Chr06:29382778..29382802 (25 bp)
CATGACCATCTTAATGATTTTTGTG
LOC_Os06g48570
Os.24710.1.A1_s_at--1129--6511Chr06:29382763..29382787 (25 bp)
GATTTTTGTGGCGACCTTAATGGGA
LOC_Os06g48570
Os.24710.1.A1_s_at--387--411Chr06:29382708..29382732 (25 bp)
ATCATGCCTATGGAAGACCTCATTG
LOC_Os06g48570
Os.24710.1.A1_s_at--282--5371Chr06:29382678..29382702 (25 bp)
GAAGAGCTCGGGTAATTCATACTGA
LOC_Os06g48570
Os.24710.1.A1_s_at--789--10571Chr06:29382558..29382582 (25 bp)
TTCTTTGGAGACACAGCAGCATATG
LOC_Os06g48570
Os.24710.1.A1_s_at--337--751Chr06:29382521..29382545 (25 bp)
ATGTATAATGTATGTGCATCTGTGA
LOC_Os06g48570
Os.24710.1.A1_s_at--517--3271Chr06:29382493..29382517 (25 bp)
CAACATGTTGTAACATTCTGCATGT
LOC_Os06g48570
Os.24710.1.A1_s_at--77--10611Chr06:29382478..29382502 (25 bp)
TTCTGCATGTAGTACAACCCCTTCA
LOC_Os06g48570
Os.24710.1.A1_s_at--828--4611Chr06:29382444..29382468 (25 bp)
GCGAGTAGATTGATTATTGGCAACT
LOC_Os06g48570
Os.24710.1.A1_s_at--424--4431Chr06:29382413..29382437 (25 bp)
GCCATGCACATGTTTCACATTTGGT
LOC_Os06g48570
Os.24710.1.A1_s_at--1116--2691Chr06:29382351..29382375 (25 bp)
AAGCTAATGACGTATCGGCCCATGA
LOC_Os06g48570
Target Sequence 
CATGACCATCTTAATGATTTTTGTGGCGACCTTAATGGGATATGNTTCTGTTATGNTGNTGNCTTTGNTTATCATGCCTA
TGGAAGACCTCATTGNCCAAGAAGAGCTCGGGTAATTCATACTGAACTCAAGAAAGGNCNAGAAATCATTGGTGGAANTC
GAGTCGATCCACACNTGGAANCTGTTAGATGATGAAAAACTAACTAAAATTGATGAGCAGNTTCTTTGGAGACACAGCAG
CATATGATTATGACCNCTATGTATAATGTATGTGCATCTGTGAATACAACATGTTGTAACATTCTGCATGTAGTACAACC
CCTTCATTNTTGTAGGCGAGTAGATTGATTATTGGCAACTGATTTTGCCATGCACATGTTTCACATTTGGTGATATTGTA
TGATGTTCGATTTTTGTTGTATACCNCAAAGCTAATGACGTATCGGCCCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24710.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis