Browse Element(s) Details


Os.38989.1.S1_at

Description gb:AK120947.1
DB_XREF= gi:37990570
TID=Os.38989.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038B04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038B04, full insert sequence.
FL= gb:AK120947.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4853011/11C2H2 zinc-finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48490Os.40855.2.S1_x_at10/116+29333887..29336235hypothetical protein
LOC_Os06g48490Os.40855.4.S1_x_at4/116+29333887..29336235hypothetical protein
LOC_Os06g48490Os.40855.4.S1_at1/116+29333887..29336235hypothetical protein
LOC_Os06g48500Os.46941.1.S1_s_at11/116+29340928..29342969expressed protein
LOC_Os06g48500Os.28181.1.A1_at11/116+29340928..29342969expressed protein
LOC_Os06g48510Os.27712.2.S1_x_at11/116+29346849..29351121choline monooxygenase, chloroplast precursor, putative, expressed
LOC_Os06g48510Os.27712.1.S1_at11/116+29346849..29351121choline monooxygenase, chloroplast precursor, putative, expressed
LOC_Os06g48520NANA6+29351932..29355138NB-ARC domain containing protein
LOC_Os06g48530Os.38989.1.S1_at11/116+29356541..29363557C2H2 zinc-finger protein, putative, expressed
LOC_Os06g48540OsAffx.20823.2.S1_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48540OsAffx.20823.2.S1_x_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48550OsAffx.15986.1.S1_at11/116+29376998..29377953hypothetical protein
LOC_Os06g48560OsAffx.15987.1.S1_at11/116+29380139..29381657Transferase family protein
LOC_Os06g48560OsAffx.20808.1.S1_x_at1/116+29380139..29381657Transferase family protein
LOC_Os06g48560OsAffx.15863.1.S1_at1/116+29380139..29381657Transferase family protein
LOC_Os06g48570Os.24710.1.A1_s_at11/116+29382239..29384809Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48570OsAffx.28173.1.S1_at11/116+29382239..29384809Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016568biological_processchromatin modification
GO:0045449biological_processregulation of transcription
GO:0048367biological_processshoot development
GO:0005634cellular_componentnucleus
GO:0031225cellular_componentanchored to membrane
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38989.1.S1_at--491--5091Chr06:29357343..29357367 (25 bp)
GCACCTCCAGAAATAGCCATGCATA
LOC_Os06g48530
Os.38989.1.S1_at--456--2611Chr06:29357262..29357286 (25 bp)
AACCCAGGAGTGCTTGGACCAATGA
LOC_Os06g48530
Os.38989.1.S1_at--1011--791Chr06:29357238..29357262 (25 bp)
ATGGGTGGTCCTGCGCCAATTATAA
LOC_Os06g48530
Os.38989.1.S1_at--647--3131Chr06:29357221..29357245 (25 bp)
AATTATAACCATGCCTCCATCTTTT
LOC_Os06g48530
Os.38989.1.S1_at--233--2791Chr06:29357195..29357216 (22 bp)
AAGATCCTCGCCGTTTGCGAAGTTA
LOC_Os06g48530
Os.38989.1.S1_at--404--10491Chr06:29356885..29356909 (25 bp)
TTACAATGACCTTGATGCTCCGGAC
LOC_Os06g48530
Os.38989.1.S1_at--876--8191Chr06:29356858..29356882 (25 bp)
GGAAGTTACCGTTCTTGACTACAGA
LOC_Os06g48530
Os.38989.1.S1_at--433--2151Chr06:29356838..29356862 (25 bp)
ACAGAAGTTTGTAGAGCTTGCCCTG
LOC_Os06g48530
Os.38989.1.S1_at--199--5931Chr06:29356825..29356849 (25 bp)
GAGCTTGCCCTGGTGTAATTGTAAT
LOC_Os06g48530
Os.38989.1.S1_at--693--6791Chr06:29356654..29356678 (25 bp)
GTTATTGAACTGTGCACCACGTGCA
LOC_Os06g48530
Os.38989.1.S1_at--255--4371Chr06:29356638..29356662 (25 bp)
CCACGTGCACTTGTAGTCCCAAGAA
LOC_Os06g48530
Target Sequence 
GCACCTCCAGAAATAGCCATGCATATGCTGAGAGAGCAAGGGCCGCCACCTCCATTTGAACCAAACGGACCTCCTCATGC
CAACCCAGGAGTGCTTGGACCAATGATGGGTGGTCCTGCGCCAATTATAACCATGCCTCCATCTTTTCGTCAAGATCCTC
GCCGTTTGCGAAGTTACAATGACCTTGATGCTCCGGACGAGGAAGTTACCGTTCTTGACTACAGAAGTTTGTAGAGCTTG
CCCTGGTGTAATTGTAATTTGCCAATCACAACTNTAGCATCTCCGGTNTAGTCTAGGTTGGTGATGTATTCTTTTTCAGA
CATAGGGGATGTCATGANCAATAGAGCATTTTTTGAGGTGTAATGCGTCAGAAACTACTGTTGTAATTTCAAATGGCAAC
ATCTGTTATTGAACTGTGCACCACGTGCACTTGTAGTCCCAAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis