Browse Element(s) Details


Os.27712.2.S1_x_at

Description gb:CB655633
DB_XREF= gi:29659358
DB_XREF=OSJNEc09D24.r
CLONE=OSJNEc09D24
TID=Os.27712.2
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.27712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) choline monooxygenase (CMO1) mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4851011/11choline monooxygenase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48470NANA6+29321136..29327225retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48480NANA6+29327608..29328060retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48490Os.40855.2.S1_x_at10/116+29333887..29336235hypothetical protein
LOC_Os06g48490Os.40855.4.S1_x_at4/116+29333887..29336235hypothetical protein
LOC_Os06g48490Os.40855.4.S1_at1/116+29333887..29336235hypothetical protein
LOC_Os06g48500Os.46941.1.S1_s_at11/116+29340928..29342969expressed protein
LOC_Os06g48500Os.28181.1.A1_at11/116+29340928..29342969expressed protein
LOC_Os06g48510Os.27712.2.S1_x_at11/116+29346849..29351121choline monooxygenase, chloroplast precursor, putative, expressed
LOC_Os06g48510Os.27712.1.S1_at11/116+29346849..29351121choline monooxygenase, chloroplast precursor, putative, expressed
LOC_Os06g48520NANA6+29351932..29355138NB-ARC domain containing protein
LOC_Os06g48530Os.38989.1.S1_at11/116+29356541..29363557C2H2 zinc-finger protein, putative, expressed
LOC_Os06g48540OsAffx.20823.2.S1_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48540OsAffx.20823.2.S1_x_at1/116+29374616..29375224retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27712.2.S1_x_at--873--2991Chr06:29349612..29349636 (25 bp)
AATGATTTCGATCGCTTAGGGACAA
LOC_Os06g48510
Os.27712.2.S1_x_at--748--8811Chr06:29349670..29349791 (25 bp)
TGATTAACAGGTATGGTCCATGGAT
LOC_Os06g48510
Os.27712.2.S1_x_at--480--10071Chr06:29349803..29349827 (25 bp)
TAGTGGTCCCATTGGATGCAACCAG
LOC_Os06g48510
Os.27712.2.S1_x_at--471--7411Chr06:29349835..29349859 (25 bp)
GTGATATTTGATTATTTCCTTGACA
LOC_Os06g48510
Os.27712.2.S1_x_at--518--5611Chr06:29349856..29350340 (25 bp)
GACAAGTCTCTTATGGACGACCAGA
LOC_Os06g48510
Os.27712.2.S1_x_at--978--5771Chr06:29350331..29350355 (25 bp)
GACGACCAGAATTTTATTGAGAGCA
LOC_Os06g48510
Os.27712.2.S1_x_at--285--5251Chr06:29350873..29350897 (25 bp)
GAATCACCAGCCTACAGTGTGGGAA
LOC_Os06g48510
Os.27712.2.S1_x_at--556--8551Chr06:29350913..29350937 (25 bp)
TGGAGATGGCCATGCACCACTTCCA
LOC_Os06g48510
Os.27712.2.S1_x_at--1039--9171Chr06:29350939..29350963 (25 bp)
TGCCTCTTACATGCCAATCTTAGTG
LOC_Os06g48510
Os.27712.2.S1_x_at--249--9211Chr06:29350950..29350974 (25 bp)
TGCCAATCTTAGTGGTGACTGGTGA
LOC_Os06g48510
Os.27712.2.S1_x_at--943--5731Chr06:29350966..29350990 (25 bp)
GACTGGTGAGTGATTTCTATGTGCA
LOC_Os06g48510
Target Sequence 
AATGATTTCGATCGCTTAGGGACAAAAGCTATNTATGCTTTTGTTTATCCAAACTTTATGATTAACAGGTATGGTCCATG
GATGGACACTAATNTAGTGGTCCCATTGGATGCAACCAGATGTAAAGTGATATTTGATTATTTCCTTGACAAGTCTCTTA
TGGACGACCAGAATTTTATTGAGAGCAGCTTAAAAGACAGCGAACAAGTACAGATGGAAGACATTGCNCTTTGCGAAGGA
GTTCAGCGGGGCCTGGAATCACCAGCCTACAGTGTGGGAAGATATGCNCCATCAGTGGAGATGGCCATGCACCACTTCCA
CTGCCTCTTACATGCCAATCTTAGTGGTGACTGGTGAGTGATTTCTATGTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27712.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis