Browse Element(s) Details


Os.28181.1.A1_at

Description gb:AK105781.1
DB_XREF= gi:32990990
TID=Os.28181.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28181 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-202-G04, full insert sequence.
FL= gb:AK105781.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4850011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48450NANA6+29313793..29316301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48460NANA6+29317879..29320819retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48470NANA6+29321136..29327225retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48480NANA6+29327608..29328060retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48490Os.40855.2.S1_x_at10/116+29333887..29336235hypothetical protein
LOC_Os06g48490Os.40855.4.S1_x_at4/116+29333887..29336235hypothetical protein
LOC_Os06g48490Os.40855.4.S1_at1/116+29333887..29336235hypothetical protein
LOC_Os06g48500Os.46941.1.S1_s_at11/116+29340928..29342969expressed protein
LOC_Os06g48500Os.28181.1.A1_at11/116+29340928..29342969expressed protein
LOC_Os06g48510Os.27712.2.S1_x_at11/116+29346849..29351121choline monooxygenase, chloroplast precursor, putative, expressed
LOC_Os06g48510Os.27712.1.S1_at11/116+29346849..29351121choline monooxygenase, chloroplast precursor, putative, expressed
LOC_Os06g48520NANA6+29351932..29355138NB-ARC domain containing protein
LOC_Os06g48530Os.38989.1.S1_at11/116+29356541..29363557C2H2 zinc-finger protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28181.1.A1_at--89--431Chr06:29342838..29342862 (25 bp)
ATCATCAGCATGATGACTTCTTTTT
LOC_Os06g48500
Os.28181.1.A1_at--502--10371Chr06:29342865..29342889 (25 bp)
TTTTTTCTGTTTTGCTAAAGATCAG
LOC_Os06g48500
Os.28181.1.A1_at--501--9831Chr06:29342880..29342904 (25 bp)
TAAAGATCAGAAGCAAAGCCAAACT
LOC_Os06g48500
Os.28181.1.A1_at--580--2651Chr06:29342895..29342919 (25 bp)
AAGCCAAACTGATTCTTCCTGCTGG
LOC_Os06g48500
Os.28181.1.A1_at--586--4391Chr06:29342897..29342921 (25 bp)
GCCAAACTGATTCTTCCTGCTGGTT
LOC_Os06g48500
Os.28181.1.A1_at--1094--9571Chr06:29342908..29342932 (25 bp)
TCTTCCTGCTGGTTGGTGCCCATAT
LOC_Os06g48500
Os.28181.1.A1_at--620--3831Chr06:29342913..29342937 (25 bp)
CTGCTGGTTGGTGCCCATATTGTAC
LOC_Os06g48500
Os.28181.1.A1_at--697--8571Chr06:29342917..29342941 (25 bp)
TGGTTGGTGCCCATATTGTACCTTA
LOC_Os06g48500
Os.28181.1.A1_at--997--6611Chr06:29342919..29342943 (25 bp)
GTTGGTGCCCATATTGTACCTTATT
LOC_Os06g48500
Os.28181.1.A1_at--899--7291Chr06:29342923..29342947 (25 bp)
GTGCCCATATTGTACCTTATTAGGA
LOC_Os06g48500
Os.28181.1.A1_at--919--4531Chr06:29342925..29342949 (25 bp)
GCCCATATTGTACCTTATTAGGAGT
LOC_Os06g48500
Target Sequence 
ATCATCAGCATGATGACTTCTTTTTTTTTTTTTCTGTTTTGCTAAAGATCAGAAGCAAAGCCAAACTGATTCTTCCTGCT
GGTTGGTGCCCATATTGTACCTTATTAGGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28181.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis