Browse Element(s) Details

Os.4602.2.S1_a_at

Description

gb:AK071376.1
DB_XREF= gi:32981399
TID=Os.4602.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4602 (NCBI UniGene Cluster)
UG_TITLE=MRNA for MAPK4 protein (mapk4 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023093O04, full insert sequence.
FL= gb:AK071376.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g48590	11/11	Mitogen-activated protein kinase homolog NTF3, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g48540	OsAffx.20823.2.S1_at	1/11	6	+	29374616..29375224	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48540	OsAffx.20823.2.S1_x_at	1/11	6	+	29374616..29375224	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g48550	OsAffx.15986.1.S1_at	11/11	6	+	29376998..29377953	hypothetical protein
LOC_Os06g48560	OsAffx.15987.1.S1_at	11/11	6	+	29380139..29381657	Transferase family protein
LOC_Os06g48560	OsAffx.20808.1.S1_x_at	1/11	6	+	29380139..29381657	Transferase family protein
LOC_Os06g48560	OsAffx.15863.1.S1_at	1/11	6	+	29380139..29381657	Transferase family protein
LOC_Os06g48570	Os.24710.1.A1_s_at	11/11	6	+	29382239..29384809	Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48570	OsAffx.28173.1.S1_at	11/11	6	+	29382239..29384809	Ser/Thr protein phosphatase family protein, expressed
LOC_Os06g48580	Os.27639.1.S1_x_at	8/11	6	+	29389781..29393947	transposon protein, putative, unclassified
LOC_Os06g48580	OsAffx.8980.1.S1_at	6/11	6	+	29389781..29393947	transposon protein, putative, unclassified
LOC_Os06g48590	Os.4602.2.S1_a_at	11/11	6	+	29397249..29401633	Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os06g48600	Os.5544.1.S1_at	10/11	6	+	29401752..29402743	Macrophage migration inhibitory factor family protein, expressed
LOC_Os06g48610	Os.24092.1.S1_at	11/11	6	+	29406746..29410788	CCT motif family protein, expressed
LOC_Os06g48620	Os.15339.1.S1_at	11/11	6	+	29416287..29417974	Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48620	OsAffx.28174.1.S1_x_at	7/11	6	+	29416287..29417974	Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48630	OsAffx.15988.1.S1_at	11/11	6	+	29418864..29421853	ANTH domain containing protein
LOC_Os06g48640	Os.12327.2.S1_at	11/11	6	+	29422085..29430510	Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48640	Os.12327.1.S1_x_at	2/11	6	+	29422085..29430510	Proteasome/cyclosome repeat family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007165	biological_process	signal transduction
GO:0007623	biological_process	circadian rhythm
GO:0009734	biological_process	auxin mediated signaling pathway
GO:0004672	molecular_function	protein kinase activity
GO:0004707	molecular_function	MAP kinase activity
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.4602.2.S1_a_at--966--1043	1	Chr06:29400958..29400982 (25 bp)	TTAGTGTCACTGAAGCTCTGGAGCA	LOC_Os06g48590
Os.4602.2.S1_a_at--328--197	1	Chr06:29400998..29401022 (25 bp)	ACTGTATGATCCAAGCGCAAACCCT	LOC_Os06g48590
Os.4602.2.S1_a_at--92--99	1	Chr06:29401096..29401120 (25 bp)	AGGAGATGCTCCACTATCACCCAGA	LOC_Os06g48590
Os.4602.2.S1_a_at--362--307	1	Chr06:29401213..29401237 (25 bp)	AATCTTATTCGCGATTGTCGCGCCT	LOC_Os06g48590
Os.4602.2.S1_a_at--800--723	1	Chr06:29401229..29401253 (25 bp)	GTCGCGCCTATCAAGCTTAAGCTAT	LOC_Os06g48590
Os.4602.2.S1_a_at--255--1061	1	Chr06:29401306..29401330 (25 bp)	TTCTGGAGTTGTTCTTCCTGTGGAC	LOC_Os06g48590
Os.4602.2.S1_a_at--347--927	1	Chr06:29401321..29401345 (25 bp)	TCCTGTGGACCTCTACTTGTAGTAT	LOC_Os06g48590
Os.4602.2.S1_a_at--744--743	1	Chr06:29401434..29401458 (25 bp)	GTGTCAACTTTCAAGTGGCCACGTT	LOC_Os06g48590
Os.4602.2.S1_a_at--96--845	1	Chr06:29401450..29401474 (25 bp)	GGCCACGTTTACACATATATTTGCT	LOC_Os06g48590
Os.4602.2.S1_a_at--931--139	1	Chr06:29401489..29401513 (25 bp)	AGACATGCTTGGTTTTAGGGCGGTT	LOC_Os06g48590
Os.4602.2.S1_a_at--1112--1005	1	Chr06:29401504..29401528 (25 bp)	TAGGGCGGTTTGCAGCTTAACATGT	LOC_Os06g48590

Target Sequence

TTAGTGTCACTGAAGCTCTGGAGCACCCTTACATGTCTCCACTGTATGATCCAAGCGCAAACCCTCCTGNTCAAGTGCCC
ATCGATCTCGACATCGATGAAAATCTTGGCGTGGATATGATCCGGGAGATGATGTGGCAGGAGATGCTCCACTATCACCC
AGAGGTTGTTGCAGGAGTGAATATGTGACAGGCAAGAACGAACATGTGAAGGCAACGTGCTACACTAAGATCTTCACATG
NTGGTTTTTTGTATAAATCTTATTCGCGATTGTCGCGCCTATCAAGCTTAAGCTATGGCGATGTCGCCCAGGTGACCTCT
TATGTAAATATGTGCGAATAAGACAGCATTCTGGAGTTGTTCTTCCTGTGGACCTCTACTTGTAGTATATGGACTAATGT
GTTGTATGAGTACGTGAAGCAGAATTCGGTATTATCAAGGCTTGTAATGTTAGATGCTCTTATATTACACTATGAAGTGT
CAACTTTCAAGTGGCCACGTTTACACATATATTTGCTATGCTGACTTGCTGAGACATGCTTGGTTTTAGGGCGGTTTGCA
GCTTAACATGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis