Browse Element(s) Details


Os.12327.2.S1_at

Description gb:CB619676
DB_XREF= gi:29614663
DB_XREF=OSIIEa04G02.r
CLONE=OSIIEa04G02
TID=Os.12327.2
CNT=10
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.12327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsRPN1b mRNA for 26S proteasome regulatory particle non-ATPase subunit1b, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4864011/11Proteasome/cyclosome repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48590Os.4602.2.S1_a_at11/116+29397249..29401633Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os06g48600Os.5544.1.S1_at10/116+29401752..29402743Macrophage migration inhibitory factor family protein, expressed
LOC_Os06g48610Os.24092.1.S1_at11/116+29406746..29410788CCT motif family protein, expressed
LOC_Os06g48620Os.15339.1.S1_at11/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48620OsAffx.28174.1.S1_x_at7/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48630OsAffx.15988.1.S1_at11/116+29418864..29421853ANTH domain containing protein
LOC_Os06g48640Os.12327.2.S1_at11/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48640Os.12327.1.S1_x_at2/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48650Os.48707.1.S1_at11/116+29433392..29440101subtilase family protein, putative, expressed
LOC_Os06g48660Os.49963.1.S1_at11/116+29440621..29443244pentatricopeptide, putative, expressed
LOC_Os06g48680Os.53779.1.S1_x_at11/116+29445626..29446537expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008540cellular_componentproteasome regulatory particle, base subcomplex (sensu Eukaryota)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12327.2.S1_at--61--7411Chr06:29422643..29422667 (25 bp)
GTGATCCTAAGGAAGAACCCAGAAT
LOC_Os06g48640
Os.12327.2.S1_at--248--3531Chr06:29422616..29422640 (25 bp)
CATGAAGATTAAGGCCTGGAGTACT
LOC_Os06g48640
Os.12327.2.S1_at--25--8791Chr06:29422403..29422427 (25 bp)
TGTTTTTGACTCGTTATACCAGAAT
LOC_Os06g48640
Os.12327.2.S1_at--356--6871Chr06:29422274..29422298 (25 bp)
GTTTGGATCCTTTGTTACAGTGTCT
LOC_Os06g48640
Os.12327.2.S1_at--502--7451Chr06:29422255..29422279 (25 bp)
GTGTCTAGCAGAAACGATGTACTTC
LOC_Os06g48640
Os.12327.2.S1_at--898--7011Chr06:29422237..29422261 (25 bp)
GTACTTCATGTGATGTTTGCACTGA
LOC_Os06g48640
Os.12327.2.S1_at--266--10151Chr06:29422192..29422216 (25 bp)
TATCCTGATGGGTATACGCCAGCTA
LOC_Os06g48640
Os.12327.2.S1_at--517--4851Chr06:29422171..29422195 (25 bp)
GCTACTACATGATGGCACTATGCTA
LOC_Os06g48640
Os.12327.2.S1_at--749--10131Chr06:29422153..29422177 (25 bp)
TATGCTATCAAAGCTGCGCAATGCT
LOC_Os06g48640
Os.12327.2.S1_at--9--4791Chr06:29422141..29422165 (25 bp)
GCTGCGCAATGCTTGTCCATATATG
LOC_Os06g48640
Os.12327.2.S1_at--447--10191Chr06:29422122..29422146 (25 bp)
TATATGTTTGGACATCCTCCACGGC
LOC_Os06g48640
Target Sequence 
GTGATCCTAAGGAAGAACCCAGAATACCATGAAGATTAAGGCCTGGAGTACTATGAAGAGGCTTGGATCAATATCTAATT
GTCACACNAAGCGACGAACAAATAGCACGATGAAGACGATGCATACTAGATACGGTGAGGGCTGGGTTAACAGGAGTTCA
GGTATAATGGGGCCAATATGACAGGAGAACTTTATAAGAACTAGGAATAGAATCGNTGGGTGTAATGGCATGGCCGAAAA
TGTTTTTGACTCGTTATACCAGAATGAAAATGACCCGAGAGTTTGTTGCCACGTCCANNNNNNNNNNNNNNNNNNNNNNN
NNNNCTGATGTTCCCCTCCTTTTTTTTTTCTTTGGATTGATCGTTTTTTGTTTGGATCCTTTGTTACAGTGTCTAGCAGA
AACGATGTACTTCATGTGATGTTTGCACTGAATACAGGATACAGCTGGGGATATCCTGATGGGTATACGCCAGCTACTAC
ATGATGGCACTATGCTATCAAAGCTGCGCAATGCTTGTCCATATATGTTTGGACATCCTCCACGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12327.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis