Browse Element(s) Details


Os.15339.1.S1_at

Description gb:AK059492.1
DB_XREF= gi:32969510
TID=Os.15339.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15339 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-H02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-028-H02, full insert sequence.
FL= gb:AK059492.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4862011/11Para-aminobenzoate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48580Os.27639.1.S1_x_at8/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48580OsAffx.8980.1.S1_at6/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48590Os.4602.2.S1_a_at11/116+29397249..29401633Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os06g48600Os.5544.1.S1_at10/116+29401752..29402743Macrophage migration inhibitory factor family protein, expressed
LOC_Os06g48610Os.24092.1.S1_at11/116+29406746..29410788CCT motif family protein, expressed
LOC_Os06g48620Os.15339.1.S1_at11/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48620OsAffx.28174.1.S1_x_at7/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48630OsAffx.15988.1.S1_at11/116+29418864..29421853ANTH domain containing protein
LOC_Os06g48640Os.12327.2.S1_at11/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48640Os.12327.1.S1_x_at2/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48650Os.48707.1.S1_at11/116+29433392..29440101subtilase family protein, putative, expressed
LOC_Os06g48660Os.49963.1.S1_at11/116+29440621..29443244pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009073biological_processaromatic amino acid family biosynthesis
GO:0009611biological_processresponse to wounding
GO:0009617biological_processresponse to bacteria
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0009697biological_processsalicylic acid biosynthesis
GO:0005950cellular_componentanthranilate synthase complex
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0004049molecular_functionanthranilate synthase activity
GO:0008909molecular_functionisochorismate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15339.1.S1_at--9--9591Chr06:29417496..29417520 (25 bp)
TCAATGCAGACAACCGTAAGTTAGA
LOC_Os06g48620
Os.15339.1.S1_at--1109--7691Chr06:29417526..29417550 (25 bp)
GGGTGAAAACGAGTCTTCTTATGAA
LOC_Os06g48620
Os.15339.1.S1_at--511--5531Chr06:29417603..29417627 (25 bp)
GAAAAATTCGATCTCCGCTGTTGGT
LOC_Os06g48620
Os.15339.1.S1_at--1106--9491Chr06:29417614..29417638 (25 bp)
TCTCCGCTGTTGGTGCACATATTAA
LOC_Os06g48620
Os.15339.1.S1_at--74--3591Chr06:29417707..29417731 (25 bp)
CATTTTGCTGAAAGAAAGGTGCCTA
LOC_Os06g48620
Os.15339.1.S1_at--868--2311Chr06:29417721..29417745 (25 bp)
AAAGGTGCCTATGCCAAGGTGGTGA
LOC_Os06g48620
Os.15339.1.S1_at--1112--8051Chr06:29417756..29417780 (25 bp)
GGAGCAAAATTCATGGTGTACTACA
LOC_Os06g48620
Os.15339.1.S1_at--257--10051Chr06:29417795..29417819 (25 bp)
TAGATTACAGCTGACATGCCTTCTC
LOC_Os06g48620
Os.15339.1.S1_at--778--3511Chr06:29417809..29417833 (25 bp)
CATGCCTTCTCCACAAAACAACAGT
LOC_Os06g48620
Os.15339.1.S1_at--744--2491Chr06:29417828..29417852 (25 bp)
AACAGTGCACATGATTTTATTGATT
LOC_Os06g48620
Os.15339.1.S1_at--709--5551Chr06:29417912..29417936 (25 bp)
GAAACCCATACTGAAATGCATTTCA
LOC_Os06g48620
Target Sequence 
TCAATGCAGACAACCGTAAGTTAGAATGGAGGGTGAAAACGAGTCTTCTTATGAAAACACAACCAGCATTACAAGGTTTG
GTATACAANTGACCATCAGTTTGGATCTGAAAAATTCGATCTCCGCTGTTGGTGCACATATTAATGGCTAAACTACAAGG
AANTCGCAGCACANCCTATTCTATAATTGGGAATTCTAAAAGCAACAAAAGGACATTTTGCTGAAAGAAAGGTGCCTATG
CCAAGGTGGTGAAAAGCACATTGGAGCAAAATTCATGGTGTACTACAATGTAGAGTTAGACTAGATTACAGCTGACATGC
CTTCTCCACAAAACAACAGTGCACATGATTTTATTGATTGATTGATTCCCCTATTGTGGTGATTGCNCTGTGTAATAATA
ATAAACTGATAAAAGAAAGAAACCCATACTGAAATGCATTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15339.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis