Browse Element(s) Details


OsAffx.28174.1.S1_x_at

Description tigr:9634.m04732
TID=OsAffx.28174.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=para-aminobenzoate synthase and glutamine amidotransferase, a bifunctional enzyme, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g486207/11Para-aminobenzoate synthase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48580Os.27639.1.S1_x_at8/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48580OsAffx.8980.1.S1_at6/116+29389781..29393947transposon protein, putative, unclassified
LOC_Os06g48590Os.4602.2.S1_a_at11/116+29397249..29401633Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os06g48600Os.5544.1.S1_at10/116+29401752..29402743Macrophage migration inhibitory factor family protein, expressed
LOC_Os06g48610Os.24092.1.S1_at11/116+29406746..29410788CCT motif family protein, expressed
LOC_Os06g48620Os.15339.1.S1_at11/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48620OsAffx.28174.1.S1_x_at7/116+29416287..29417974Para-aminobenzoate synthase, putative, expressed
LOC_Os06g48630OsAffx.15988.1.S1_at11/116+29418864..29421853ANTH domain containing protein
LOC_Os06g48640Os.12327.2.S1_at11/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48640Os.12327.1.S1_x_at2/116+29422085..29430510Proteasome/cyclosome repeat family protein, expressed
LOC_Os06g48650Os.48707.1.S1_at11/116+29433392..29440101subtilase family protein, putative, expressed
LOC_Os06g48660Os.49963.1.S1_at11/116+29440621..29443244pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000162biological_processtryptophan biosynthesis
GO:0009073biological_processaromatic amino acid family biosynthesis
GO:0009611biological_processresponse to wounding
GO:0009617biological_processresponse to bacteria
GO:0009618biological_processresponse to pathogenic bacteria
GO:0009627biological_processsystemic acquired resistance
GO:0009697biological_processsalicylic acid biosynthesis
GO:0005950cellular_componentanthranilate synthase complex
GO:0009507cellular_componentchloroplast
GO:0009536cellular_componentplastid
GO:0004049molecular_functionanthranilate synthase activity
GO:0008909molecular_functionisochorismate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28174.1.S1_x_at--84--2631Chr06:29417056..29417080 (25 bp)
AACCTGGGAGTGTGCATGTTCCTCG
LOC_Os06g48620
OsAffx.28174.1.S1_x_at--762--731Chr06:29417071..29417095 (25 bp)
ATGTTCCTCGCCTCATGGATGTGGA
LOC_Os06g48620
OsAffx.28174.1.S1_x_at--83--1751Chr06:29417152..29417176 (25 bp)
ACCTAAGCCCTGTCGATTGTGTAAA
LOC_Os06g48620
OsAffx.28174.1.S1_x_at--63--2951Chr06:29417175..29417199 (25 bp)
AAGGCTGCCTTTCCAGGAGGTTCAA
LOC_Os06g48620
OsAffx.28174.1.S1_x_at--589--7551Chr06:29417206..29417230 (25 bp)
GGGCCCCGAAAGTTAGATCCATGGA
LOC_Os06g48620
OsAffx.28174.1.S1_x_at--282--8311Chr06:29417375..29417399 (25 bp)
GGCTATTGTAGCATTGTCAGATCCA
LOC_Os06g48620
OsAffx.28174.1.S1_x_at--467--11Chr06:29417474..29417498 (25 bp)
ATACAACCCAGATCGTTCGGATTCA
LOC_Os06g48620
OsAffx.28174.1.S1_x_at--699--2211Chr06:29417505..29417996 (25 bp)
ACAACCATTGCACATGTCTCACCTG
NONE
OsAffx.28174.1.S1_x_at--1115--7151Chr06:29417987..29418011 (25 bp)
GTCTCACCTGAGTTCAAATATCTGA
NONE
OsAffx.28174.1.S1_x_at--141--8751Chr06:29418021..29418045 (25 bp)
TGTACTGTTTCTCAATTCATGCTAG
NONE
OsAffx.28174.1.S1_x_at--951--9611Chr06:29418037..29418061 (25 bp)
TCATGCTAGTATTGATCCTACTGGT
NONE
Target Sequence 
AACCTGGGAGTGTGCATGTTCCTCGCCTCATGGATGTGGAATCATATAAAACTGTACATACCATGGTAAGTACCATTCGT
GGAACCAAAATGTCGGACCTAAGCCCTGTCGATTGTGTAAAGGCTGCCTTTCCAGGAGGTTCAATGACCGGGGCCCCGAA
AGTTAGATCCATGGAGATTCTTGATTCACTTGAAACTAGTCCGAGAGGAATATACTCAGGATCAGTTGGATTCTTTTCAT
ATAACAAGACTTTTGACTTGAATATCGTGATCAGAACAGTTGTCCTGCACAATGGAGAAGCTTCGATTGGGGCAGGCGGG
GCTATTGTAGCATTGTCAGATCCAGAAGCAGAGTACAATGAGATGCTGCTTAAAGCAAAAGCTCCAACAAAGGTGGTTGA
AGAGTGCAGTCAACAAATATACAACCCAGATCGTTCGGATTCAATGCAGACAACCATTGCACATGTCTCACCTGAGTTCA
AATATCTGAAATTTACCATGTACTGTTTCTCAATTCATGCTAGTATTGATCCTACTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28174.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis