Browse Element(s) Details


OsAffx.15990.1.S1_at

Description tigr:9634.m04739
TID=OsAffx.15990.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4869011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g48650Os.48707.1.S1_at11/116+29433392..29440101subtilase family protein, putative, expressed
LOC_Os06g48660Os.49963.1.S1_at11/116+29440621..29443244pentatricopeptide, putative, expressed
LOC_Os06g48680Os.53779.1.S1_x_at11/116+29445626..29446537expressed protein
LOC_Os06g48690OsAffx.15990.1.S1_at11/116+29459033..29459946hypothetical protein
LOC_Os06g48700Os.7468.1.S1_at11/116+29461290..29466298expressed protein
LOC_Os06g48710Os.20602.2.S1_x_at9/116+29467259..29469439hAT family dimerisation domain containing protein
LOC_Os06g48720Os.54979.1.S1_at11/116+29476951..29479907Cadmium/zinc-transporting ATPase 4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15990.1.S1_at--441--8691Chr06:29459888..29459912 (25 bp)
TGTGCTTGGCAGTTCTTGTGCTTAT
LOC_Os06g48690
OsAffx.15990.1.S1_at--153--1231Chr06:29459878..29459902 (25 bp)
AGTTCTTGTGCTTATGTCTGCCACT
LOC_Os06g48690
OsAffx.15990.1.S1_at--1082--10431Chr06:29459867..29459891 (25 bp)
TTATGTCTGCCACTTCCATATCTTG
LOC_Os06g48690
OsAffx.15990.1.S1_at--181--9211Chr06:29459860..29459884 (25 bp)
TGCCACTTCCATATCTTGCCATGCA
LOC_Os06g48690
OsAffx.15990.1.S1_at--906--9191Chr06:29459844..29459868 (25 bp)
TGCCATGCACCACCAGCAAGGAATA
LOC_Os06g48690
OsAffx.15990.1.S1_at--1060--5471Chr06:29459139..29459163 (25 bp)
GAACTATTTGCATCTATTATCCAGC
LOC_Os06g48690
OsAffx.15990.1.S1_at--946--151Chr06:29459124..29459148 (25 bp)
ATTATCCAGCTTGCACGATCGAGGG
LOC_Os06g48690
OsAffx.15990.1.S1_at--904--1851Chr06:29459110..29459134 (25 bp)
ACGATCGAGGGATGCGTGATAATGT
LOC_Os06g48690
OsAffx.15990.1.S1_at--758--9731Chr06:29459091..29459115 (25 bp)
TAATGTGTGGAAAAGTTGTTGGCGC
LOC_Os06g48690
OsAffx.15990.1.S1_at--174--6651Chr06:29459077..29459101 (25 bp)
GTTGTTGGCGCGAATACAGGCCATT
LOC_Os06g48690
OsAffx.15990.1.S1_at--711--4591Chr06:29459068..29459092 (25 bp)
GCGAATACAGGCCATTGCGACAATT
LOC_Os06g48690
Target Sequence 
TGTGCTTGGCAGTTCTTGTGCTTATGTCTGCCACTTCCATATCTTGCCATGCACCACCAGCAAGGAATAGTGATGGAACT
ATTTGCATCTATTATCCAGCTTGCACGATCGAGGGATGCGTGATAATGTGTGGAAAAGTTGTTGGCGCGAATACAGGCCA
TTGCGACAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis